Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTATGAACATGGGTACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacataatgccctttttattctgtaattgttctatttagtaaaaaaaattcatctaactgtttgccatcacctctcatttcttcatggttcctag

Basic information

species Zea mays
transcript GRMZM2G113619_T04
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g24650.3 (Oryza sativa), 5'ss of exon 5
CCTTATGAACATGGGTACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacataatgccctttt-tattctgtaatt--gttctatttagtaaaaaaaattcatctaactgtttgccatcacctctcatttcttcatggttcctag-----------
|| |||||||| || |||||||||||| | ||    ||||||||||||||||||||||| || ||||||| ||| ||||  || | ||||    |  |  |||||  ||  ||  | |   |  | | | |  | |   ||    || ||| |  | |  ||| |             
CCATATGAACACGGTTACACTGCACCTACTAGGCCTCATCCTGATGAAACTACCATTGACATCAGgtagggcatcatgcttttctatattgaagacatgggttcttgttgatattatatcgtggtgtcatttgtagtattccaggctaattgcaacctatttcttttggaatgcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78086641|gb|DV515034.1|DV515034
EST:     CCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
genomic: CCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
EST: gi|78086642|gb|DV515035.1|DV515035
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
EST: gi|78089708|gb|DV518082.1|DV518082
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAAATACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
EST: gi|76280760|gb|DV020328.1|DV020328
EST:     TACACTGCACCTCCCAGAGGGCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGGACA-TTACCGGTACCGCATTTGACTTGCGTGATCCTAGGA
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGG-ACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGA
EST: gi|91053257|gb|EB163675.1|EB163675
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTTGGGTGGACAATTACGGGTACCGC
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGT-GGGTGGACAATTACCGGTACCGC
EST: gi|71424785|gb|DR806435.1|DR806435
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
EST: gi|50326768|gb|CO521894.1|CO521894
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
EST: gi|71766652|gb|DR964589.1|DR964589
EST:     ACACTGC-CCTCCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGGGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
genomic: ACACTGCACCT-CCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
EST: gi|166620083|gb|EG102933.1|EG102933
EST:     ATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
genomic: ATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
EST: gi|93284055|gb|EB676319.1|EB676319
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
EST: gi|211143062|gb|FL281157.1|FL281157
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
EST: gi|94472719|gb|EB701677.1|EB701677
EST:     CCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACGGCATTTGACTTGCGTGATCCTAGGAT
genomic: CCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
EST: gi|8551597|gb|BE128942.1|BE128942
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACCG
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCG
EST: gi|71766653|gb|DR964590.1|DR964590
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATTCTAGGAT
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
EST: gi|440689|gb|T14710.1|T14710
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACCGCATTTNACTTGCGTGATCCTAGG
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGG
EST: gi|76291932|gb|DV031500.1|DV031500
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAG                         TGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... tggttcctagTGGTGGGTGGACAATTACCGGTACCGCATTTGACTTGCGTGATCCTAGGAT