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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTATGAACATGGGTACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacataatgccctttttattctgtaattgttctatttagtaaaaaaaattcatctaactgtttgccatcacctctcatttcttcatggttcctagtggtgggtggacaattaccggtaccgcatttgacttgcgtgatcctag

Basic information

species Zea mays
transcript GRMZM2G113619_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113619_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g24650.3 (Oryza sativa), 5'ss of exon 5
CCTTATGAACATGGGTACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacataatgccctttttattctgtaattgttctatttagtaaaaaaaat-tcatctaactgtttgccatcacctctcatttcttcatggttcctagtggtgggtggacaattaccggtaccgcatttgacttgcgtgatcctag
|| |||||||| || |||||||||||| | ||    ||||||||||||||||||||||| || ||||||| ||| ||||  ||| |||  || |    |    | | ||  | |  || || |       ||||   |   |     |   | ||   |   |  |   |  || |||                                   
CCATATGAACACGGTTACACTGCACCTACTAGGCCTCATCCTGATGAAACTACCATTGACATCAGgtagggcatcatgct-tttctatattgaagacatgggttcttgttgatattatatcgtggtgtcatttgtagtattccaggctaattgcaacctatttcttttggaatgcacag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86471507|gb|DY237877.1|DY237877
EST:     TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTTCCATTGATATAAG                         GATACTGGCAGTGGCACAAAACCACATCATGGAAGCTGAATATGATGATTA
genomic: TACACTGCACCTCCCAGAGGCCATCCTGATGAAACTACCATTGATATAAGgtaggacata ... gtgatcctagGATACTTGCAGTGGCACAAAACCACATCATGGAAGCTGAATATGATGATTA