1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AACTATGAGACATCTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatgtggtaattcctgtgcaggtgaagttattgcactttggtaaggtttatggatttttcaatcattctaaaatgtaaacaatcattggacaaa...
species | Zea mays |
transcript | GRMZM2G113592_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGG GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTCEST: gi|30087143|gb|CB885351.1|CB885351
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGG GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTCEST: gi|149078708|gb|EE167506.2|EE167506
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTTAAAGG GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTCEST: gi|71312602|gb|DR792823.1|DR792823
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGG GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTCEST: gi|91873232|gb|EB403189.1|EB403189
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGG GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTCEST: gi|31358158|gb|CD442515.1|CD442515
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGG GTTCGTCTTGTAACTGAGAAAGATACCAGTAAACCTAGAGGATATGCATTCEST: gi|91052321|gb|EB162739.1|EB162739
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGG GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTCEST: gi|149072504|gb|EE160783.2|EE160783
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGG GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTCEST: gi|30307225|gb|CD001898.1|CD001898
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGG GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTCEST: gi|211227312|gb|FL251473.1|FL251473
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: CTGAGCAGAGGATCAAATGCGAGTTTGAAGGTTATGGTCCTATTAAAAGG GTTCGTCTTGTAACTGAGAAAGATCCAAGTAAACCTAGAGGATATGCATTCEST: gi|211227315|gb|FL251476.1|FL251476
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: TGAGCAGAGGATCAAACGCGAGTTTGAAGGGTATGGTCCCTATTAAA-GG GTTCGTCTTGNTA-CTGANGAA-GATACAAGTAAACCTAGAGGATATGCATEST: gi|71310643|gb|DR791619.1|DR791619
genomic: TGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCC-TATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTG-TAACTGA-GAAAGATACAAGTAAACCTAGAGGATATGCAT
EST: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGG GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTCEST: gi|91051679|gb|EB162097.1|EB162097
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGGTATGGTCCTATTAAAAGG GTTCGTCTTGTAACTGAGAAAGATACAAGTA
genomic: CTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTATGAGACATCTGAGCAGAGGATCAAACGCGAGTTTGAAGGTTATGGTCCTATTAAAAGGgtaagtaatgtggtaattcctgtgcaggtgaagttattgcactttggtaaggtttatggatttttcaatcattctaaaatgtaaacaatcattggacaaa
- - - - - - - GAGCAG
- - - - - - - - - AGAGGA
- - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - TTGAAG