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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCCAACGTATGCCAATCGGCCAGACAGCGCTTTTCCTCCAACTGTGTTGATCTGTGCTGGATTTCACTCCTCGTGTGGAAGCTCTACATGTGCAAGgttagcacggctgttttaggctttatgcctgtctgtcgtgcagcataaaatatgctaaaaattaaaagaacaaacacaattacaactaaaaatataacatattcttaacttcaggggaactttcttattgaatattgtttcattactaaatttgatctttccag

Basic information

species Zea mays
transcript GRMZM2G113592_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15313685|gb|BI478905.1|BI478905
EST:     TCTACATGTGCAAG                         GTTCGTCTTGTAACTGGAGAAAGATACAAGTAAACCTAGAGGATATGCATT
genomic: TCTACATGTGCAAGgttagcacgg ... atctttccagGTTCGTCTTGTAACT-GAGAAAGATACAAGTAAACCTAGAGGATATGCATT
EST: gi|16137392|gb|BI894257.1|BI894257
EST:     GAAGCTCTACATGTGCAAG                         GTTCGTCTTGTAACTGAGAAAGATACAAGTAATCCTAGAGGATATGCATTC
genomic: GAAGCTCTACATGTGCAAGgttagcacgg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: gi|15323613|gb|BI478906.1|BI478906
EST:     CTACATGTGCAAG                         GTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
genomic: CTACATGTGCAAGgttagcacgg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAAACCTAGAGGATATGCATTC
EST: gi|16137327|gb|BI894192.1|BI894192
EST:     TGGAAGCTCTACATGTGCAAG                         GTTCGTCTTGTAACTGAGAAAGATACAAGTAATACCTAGAGGATATGCATT
genomic: TGGAAGCTCTACATGTGCAAGgttagcacgg ... atctttccagGTTCGTCTTGTAACTGAGAAAGATACAAGTAA-ACCTAGAGGATATGCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTCCCAACGTATGCCAATCGGCCAGACAGCGCTTTTCCTCCAACTGTGTTGATCTGTGCTGGATTTCACTCCTCGTGTGGAAGCTCTACATGTGCAAGgttagcacggctgttttaggctttatgcctgtctgtcgtgcagcataaaatatgctaaaaattaaaagaacaaacacaattacaactaaaaatataacatattcttaacttcaggggaactttcttattgaatattgtttcattactaaatttgatctttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG