Sequence
atgc intronic sequence ATGC exonic sequenceCTCCCCTGTTGCTTTCATTACATGCTTCGTGACACTATTTGCTTTGGTCATTGCTATAACCAAAGATCTCCCTGATGTTGAAGGAGATCGCAAgtgagtttgtaacttcacatagttcttttttttctcgaacacgcaggaaactgtgtatctttatattaagaagaaaaacttcttaatatggaattatggc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G113476_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g38850.1 (Oryza sativa), 5'ss of exon 6
CTCCCCTGTTGCTTTCATTACATGCTTCGTGACACTATTTGCTTTGGTCATTGCTATAACCAAAGATCTCCCTGATGTTGAAGGAGATCGCAAgtgagtttgtaactt-cacatagttcttttttttctcgaacacgcaggaaa-ctgtgtatctttatattaagaagaaaaacttcttaatatggaattatggc
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CTCGCCTGTTGCTTTCATTACATGCTTCGTGACTTTATTTGCTTTGGTCATTGCTATAACCAAAGATCTCCCAGATGTTGAAGGGGATCGGAAgtgagtttctagttggcacttggctctacaactatggcatcattttttttctctgtcaaagatcgtgctcatttttttttggttttggtgcggaagtctc--
upper sequence: GRMZM2G113476_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA09G15720.1 (Glycine max), 5'ss of exon 6
CTCCCCTGTTGCTTTCATTACATGCTTCGTGACACTATTTGCTTTGGTCATTGCTATAACCAAAGATCTCCCTGATGTTGAAGGAGATCGCAAgtgagtttgtaacttcacatagttcttttttttctcgaacacgcaggaaactgtgtatctttatattaagaagaaaaacttcttaatatggaattatggc-----
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CTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGTGATCGCAAgtaagttt-tggtatccagtagtgtaaacattgc---agttcactg-atcttatttacccgggtggccgggttgctgatattgcatttcacctctatttcaacaa
upper sequence: GRMZM2G113476_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G26820.1 (Glycine max), 5'ss of exon 6
CTCCCCTGTTGCTTTCATTACATGCTTCGTGACACTATTTGCTTTGGTCATTGCTATAACCAAAGATCTCCCTGATGTTGAAGGAGATCGCAAgtgagttt--gtaact--tcacatagttcttttt------tttctcgaacacgcaggaaactgtgtatctttatattaagaagaaaaacttcttaatatggaattatggc----------------------------------------------------------------
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CTCTCCTGTGGTTTTTATCACAACATTTGTAACATTTTTCGCACTGGTAATTGCTATAACAAAAGATCTTCCTGATGTTGAAGGAGATCGCAAgtaagttttggtatccagttgcatagttgctgatattgcatttcacctatctttcactaaatctgcatttgtgtgtgtggaatgtatatatactgcttataaagcatactctgcttgcaccctttaattaggtgctgtatctaatatggatttgcatgtcataactaacttcag
upper sequence: GRMZM2G113476_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT3G11945.1 (Arabidopsis thaliana), 5'ss of exon 6
CTCCCCTGTTGCTTTCATTACATGCTTCGTGACACTATTTGCTTTGGTCATTGCTATAACCAAAGATCTCCCTGATGTTGAAGGAGATCGCAAgtgagtttgtaacttcacatagttcttttttttctcgaacacgcaggaaactgtgtatctttatattaagaagaaaaactt-cttaatatggaattatggc---------------------------------------------------------
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TGCACCTGTGGCGTTCATCACATCTTTTGTGACACTGTTTGCACTGGTCATTGCTATTACAAAGGACCTTCCTGATGTTGAAGGAGATCGAAAgtaagtaactg--cacgcataaccattttctttccgctctttggctcaatccatttgacagtcaaagacaatgtttaaccagctccgtttgatatattgtctttatgtgtttgttcaagcatgtttagttaatcatgcctttgattgatcttgaatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13558184|gb|BG549540.1|BG549540EST: TTGGTCATTGCTATAACCAAAGATCTCCCTGATGTTGAAGGAGATCGCAA GTATCAAATATCAACTTTGGCAACAAAGCTTGGTGTCAGAAATATTGCATT
genomic: TTGGTCATTGCTATAACCAAAGATCTCCCTGATGTTGAAGGAGATCGCAAgtgagtttgt ... ttcccaccagGTATCAAATATCAACTTTGGCAACAAAGCTTGGTGTCAGAAATATTGCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCCCCTGTTGCTTTCATTACATGCTTCGTGACACTATTTGCTTTGGTCATTGCTATAACCAAAGATCTCCCTGATGTTGAAGGAGATCGCAAgtgagtttgtaacttcacatagttcttttttttctcgaacacgcaggaaactgtgtatctttatattaagaagaaaaacttcttaatatggaattatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC