1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGAAAAGAATCCAGAAACCGCCTTTTCGAACAAGAAAACAGCGCTTTTGAAGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtcccttccctaacaccccctgtgcacactgatgacaggcagacagagaaatcacactgccccctgatgattttatttccttgctag
species | Zea mays |
transcript | GRMZM2G113267_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAGEST: gi|71444583|gb|DR825633.1|DR825633
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: AGATTATCGAGGAGTCTCCTGGCCGCAAAACAATTGTTTTCTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAGEST: gi|149111889|gb|EE191046.2|EE191046
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAGEST: gi|149086256|gb|EE175797.2|EE175797
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAGEST: gi|149082649|gb|EE171854.2|EE171854
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTTTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAGEST: gi|78026219|gb|DV494606.1|DV494606
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: CGCAAAACAATTGTTTTCTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAGEST: gi|31357346|gb|CD441703.1|CD441703
genomic: CGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAGEST: gi|149083804|gb|EE173175.2|EE173175
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTTTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAGEST: gi|149027555|gb|EE046565.2|EE046565
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAGEST: gi|32840583|gb|CD980264.1|CD980264
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAG ATTGACACATGTAGAAAAGTAGAGAATGCGCTGAGGCGGGTTGACAGGAAGEST: gi|71317553|gb|DR795508.1|DR795508
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: GATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGC-ACAAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAEST: gi|4753537|gb|AI657447.1|AI657447
genomic: GATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAAC-AAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAA
EST: AGATTATCGAGGAGTCTCCTGTCCGCAAACCAATTGTTTTTTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGNTGAGGCGGGTGGACAGGAAGEST: gi|76285737|gb|DV025305.1|DV025305
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTG-TTTCTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAGEST: gi|71444660|gb|DR825710.1|DR825710
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: AGATTATGGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGTTGAGGCGGGTGGACAGGAAGEST: gi|71444661|gb|DR825711.1|DR825711
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
EST: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAG ATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
genomic: AGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtccct ... tccttgctagATTGAGACATGTAGAAAAGTTGAGAATGCGCTGAGGCGGGTGGACAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAAGAATCCAGAAACCGCCTTTTCGAACAAGAAAACAGCGCTTTTGAAGATTATCGAGGAGTCTCCTGTCCGCAAAACAATTGTTTTCTGCAACAAGgtaagtcccttccctaacaccccctgtgcacactgatgacaggcagacagagaaatcacactgccccctgatgattttatttccttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG