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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACCTTTTCGTCACGTAACATGCATAATGTCCTCAACATTGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaactggtttcttttcagagtgttcattggtcttgttaaatactccctccgttctcgaatatttgtcgcccgctagttcatttttgaactaaaacgtgacaaataaaaaactggagggagtaacattctgttgtctgtgtgttaataactctccttgcactttcaag

Basic information

species Zea mays
transcript GRMZM2G112337_T04
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88756750|gb|DY540891.1|DY540891
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCA-                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|148995697|gb|EE034920.2|EE034920
EST:     ATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTGGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: ATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|67021761|gb|CO450510.1|CO450510
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|71773221|gb|DR971130.1|DR971130
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|148928684|gb|EC873287.2|EC873287
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|89249959|gb|DY621745.1|DY621745
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|71306089|gb|DR789194.1|DR789194
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|149098529|gb|EE184515.2|EE184515
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|60351440|gb|DN218413.1|DN218413
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|149078381|gb|EE167156.2|EE167156
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|89763677|gb|DY690772.1|DY690772
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|149088740|gb|EE177864.2|EE177864
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAACCTTTTCGTCACGTAACATGCATAATGTCCTCAACATTGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaactggtttcttttcagagtgttcattggtcttgttaaatactccctccgttctcgaatatttgtcgcccgctagttcatttttgaactaaaacgtgacaaataaaaaactggagggagtaacattctgttgtctgtgtgttaataactctccttgcactttcaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT