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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAACAGCAACCTTTTCGTCACGTAACATGCATAATGTCCTCAACATTGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaactggtttcttttcagagtgttcattggtcttgttaaatactccctccgttctcgaatatttgtcgcccgctagttcatttttgaactaaaacgtgacaaataaaaaactggagggagtaacattctgttgtctgtgtgttaataactctccttgcactttcaag

Basic information

species Zea mays
transcript GRMZM2G112337_T03
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76013335|gb|DT940505.1|DT940505
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|60351440|gb|DN218413.1|DN218413
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|149015046|gb|EE044792.2|EE044792
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|88756750|gb|DY540891.1|DY540891
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCA-                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|76015436|gb|DT942606.1|DT942606
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|148928684|gb|EC873287.2|EC873287
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|211422903|gb|FL467603.1|FL467603
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|148975119|gb|EE025688.2|EE025688
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|148995697|gb|EE034920.2|EE034920
EST:     ATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTGGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: ATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|71763124|gb|DR961061.1|DR961061
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|67021761|gb|CO450510.1|CO450510
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|76289490|gb|DV029058.1|DV029058
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|71773221|gb|DR971130.1|DR971130
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|67014008|gb|CO442757.1|CO442757
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAANAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|149070597|gb|EE159002.2|EE159002
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|71324223|gb|DR798814.1|DR798814
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|149100804|gb|EE186898.2|EE186898
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|74246102|gb|DT654016.1|DT654016
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|76015435|gb|DT942605.1|DT942605
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|149081897|gb|EE171058.2|EE171058
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|78112667|gb|DV531061.1|DV531061
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|76013336|gb|DT940506.1|DT940506
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|149088740|gb|EE177864.2|EE177864
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|89249959|gb|DY621745.1|DY621745
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|71759353|gb|DR957290.1|DR957290
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|71306089|gb|DR789194.1|DR789194
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|148947543|gb|EC893016.2|EC893016
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|149078381|gb|EE167156.2|EE167156
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|101402370|gb|EB822760.1|EB822760
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|89763677|gb|DY690772.1|DY690772
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|148999824|gb|EE036848.2|EE036848
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|149098529|gb|EE184515.2|EE184515
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|148933839|gb|EC877798.2|EC877798
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|211422902|gb|FL467602.1|FL467602
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|78112666|gb|DV531060.1|DV531060
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|149096272|gb|EE181982.2|EE181982
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
EST: gi|148978441|gb|EE026169.2|EE026169
EST:     TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAG                         GCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG
genomic: TGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaact ... cactttcaagGCGGAACTCGAAGTTGAAAGGCTTGATCAGCTAAAAGCTAGTAGGATGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGAACAGCAACCTTTTCGTCACGTAACATGCATAATGTCCTCAACATTGGATGATGTGATAGTTCCAGGAGCTCTGGCTCTTGATGTAATTCAGCAGgttagaaactggtttcttttcagagtgttcattggtcttgttaaatactccctccgttctcgaatatttgtcgcccgctagttcatttttgaactaaaacgtgacaaataaaaaactggagggagtaacattctgttgtctgtgtgttaataactctccttgcactttcaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT