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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCCGCTGTCTTTGCAGCCTTTGTTGCAGGTATGGCATGTTTGGTCGGTGTTGACTTCAGTGCCAAGATCCTTGCATCTATTGCTAAGTCATTTGAGgtatcacacctttattacgaagataaatatgacttattatgttctctgtatatctgcttaccgtgaggattcttgaaccatgaaccatttttcttttgtgtggggatcctaatagtttttattgaactgatactatttgtgttttctgtggcag

Basic information

species Zea mays
transcript GRMZM2G111138_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111138_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os05g05450.1 (Oryza sativa), 5'ss of exon 3
GTATGCCGCTGTCTTTGCAGCCTTTGTTGCAGGTATGGCATGTTTGGTCGGTGTTGACTTCAGTGCCAAGATCCTTGCATCTATTGCTAAGTCATTTGAGgtatcacacctt----tattacgaagataaatatgacttattatgttctctgtatatctgcttaccgtgaggattcttgaaccatgaaccatttttcttttgtgtggggatcctaatagtttttattgaactgatactatttgtgttttc----tgtggcag
|||||| ||||| |||||| | |||||||||||||||||| |  |||| ||  ||||||||||||||||||||||||| ||| |||| ||||  |||||||||| ||   ||    |||||| ||||| |||   |  | || | |||| |    ||||| ||       |||| ||||    |||  |    |  || |       |  |  |  || ||||   | |  | |||   | | |  ||||    |||| |||
GTATGCTGCTGTATTTGCATCATTTGTTGCAGGTATGGCAAGCCTGGTTGGCATTGACTTCAGTGCCAAGATCCTTGCTTCTCTTGCAAAGTTGTTTGAGgtatgactatttctactattacaaagatgaattgcaactgttgttttcttt---catctgtttt------ggatacttgggttatgttctgagtgactatcaca---gtttatttttatttttagataagttaatatgttgtcttctttcccattgtgacag

upper sequence: GRMZM2G111138_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA16G04250.1 (Glycine max), 5'ss of exon 5
GTATGCCGCTGTCTTTGCAGCCTTTGTTGCAGGTATGGCATGTTTGGTCGGTGTTGACTTCAGTGCCAAGATCCTTGCATCTATTGCTAAGTCATTTGAGgtatcacacctttattacgaagataaatat-gacttatt---atgttctctgtatatctgc--ttaccgtgaggattcttgaaccatgaaccatttttcttttgtgtggggatcctaatagtttttattgaactgatactatttgtgttttctgtggcag-
|||||| ||||| ||||| || |||||||| || |||||||||||||||||||||||||||||||| ||| |  | || ||  |||| || |  ||||||||||  ||     |  |  ||  |||| |  || ||  |   ||||| | |    || | |  || | ||     ||  |   |||     | |||| || |  |    |  |  ||       |||   || | ||| | || || | || | || |   
GTATGCTGCTGTTTTTGCTGCATTTGTTGCTGGGATGGCATGTTTGGTCGGTGTTGACTTCAGTGCAAAGTTTATGGCTTCCTTTGCAAAATGCTTTGAGgtatatcatgcaaacaaataaattaaaaaccgatttgctgatatgttttttactcatttcccttttcagttttagtttcttctccagaccaccttttgctctcattacagtgttttagaga---ttacaaaagttataatcttcgtatattttctgcccag

upper sequence: GRMZM2G111138_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA19G29170.1 (Glycine max), 5'ss of exon 5
GTATGCCGCTGTCTTTGCAGCCTTTGTTGCAGGTATGGCATGTTTGGTCGGTGTTGACTTCAGTGCCAAGATCCTTGCATCTATTGCTAAGTCATTTGAGgtatcacacctttattacgaagataaatatgactt----attatgttctctgtatatctgcttaccgtgaggattcttgaaccatgaaccatttttcttttgtgtggggatcctaatagtttttattgaactgata--ctatttgtgttttctgtggcag
|||||| ||||| ||||| || |||||||| || |||||||||||||||||||||||||||||||| ||| |  | || ||  |||| || |  ||||||||||   |     |  |  ||  |||| |  | ||    | | |||| | | |   |  || |     |       ||   |   | | ||  |||   |    |     |  |  |||   |||   || | |||  ||  || | |||||||   |||
GTATGCTGCTGTTTTTGCTGCATTTGTTGCTGGGATGGCATGTTTGGTCGGTGTTGACTTCAGTGCAAAGTTTGTGGCTTCCTTTGCAAAATGTTTTGAGgtatagaatacaaacaaataaattaaaaaccaatttgctaatgtgttttttattcgttggccttttcagttttagtttcttctccggatcaccttttgctctcattacagtgttt-tagagattacaaaagttatagtcttcttatattttctgct-cag

upper sequence: GRMZM2G111138_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv08s0056g01280.t01 (Vitis vinifera), 5'ss of exon 4
GTATGCCGCTGTCTTTGCAGCCTTTGTTGCAGGTATGGCATGTTTGGTCGGTGTTGACTTCAGTGCCAAGATCCTTGCATCTATTGCTAAGTCATTTGAGgt--atcacacctttattacgaagataaatatgacttatt-----atgttctctgtatatctgcttaccgtgaggattcttgaaccatgaaccatttttcttttgtgtggggatc-ctaatagtttttattgaactgatactatttgtgttttctgtggcag-------------------------------------
|||||| ||||| |||||||| ||||||||||| ||||| || ||||| ||  ||||||||||||| ||| | ||||| ||  ||||||| || ||||||||  ||| | ||    |  | ||||    | | | ||| |     | |     | | || ||| | |     ||   |||  |      |  |||||   || |   |   | |  ||  |||  | | || |   ||   | |   | ||||   ||  |                                      
GTATGCTGCTGTTTTTGCAGCTTTTGTTGCAGGCATGGCTTGCTTGGTTGGGATTGACTTCAGTGCAAAGCTTCTTGCTTCCCTTGCTAAATCTTTTGAGgtttatctctccaacctggccaagaattttttcatttagtcctggaagagacatttttagctgataaattgaagtgatctatagtatctaggcatttgcattataacttcagttggcttgtagcatgtgttaattagagcttttgaatattttagttgtgaatcacggcaacttcaacaatttttgttttctgcatcag