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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTTTCCAACATTGGCAACAATACCTGTATGGATTGGTCTTTACCAGGCACTTTCAAATGTAGCAAATGAGgtaagtttagtccaactactttaagcttgcttgattaagtgttttttttgggctgagtgtgttctatgatgtgaag

Basic information

species Zea mays
transcript GRMZM2G110063_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110063_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g05800.1 (Oryza sativa), 5'ss of exon 5
GATGTTTTCCAACATTGGCAACAATACCTGTATGGATTGGTCTTTACCAGGCACTTTCAAATGTAGCAAATGAGgtaag--tttagtccaactactttaagcttgcttgattaagtgttttttttgggctgagtgtgttctatga-tgtgaag
||||||||||||| ||||||||||||||||| |||||||| || ||||| || ||||||||||||||||| |||||||   |  | |||  || | | |   |||||| |||||| |  |||| |   || ||||  || |||   | |||||
GATGTTTTCCAACTTTGGCAACAATACCTGTCTGGATTGGCCTCTACCAAGCCCTTTCAAATGTAGCAAACGAGgtaaaactcaaatcctgcttcctaatatttgcttcattaagaggattttgtt--ctaagtggcttatatttctctgaag

upper sequence: GRMZM2G110063_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA12G06920.1 (Glycine max), 5'ss of exon 5
GATGTTTTCCAACATTGGCAACAATACCTGTATGGATTGGTCTTTACCAGGCACTTTCAAATGTAGCAAATGAGgtaagtttagtccaactactttaagcttgcttgattaagtgt---tttttttgggctgagtgtgttct-atgatgtgaag---------------------------------
| ||||| ||||| ||||| ||||| || || ||||||||||| ||||| ||  | |||||||| |||||||||||||   || |  || ||  | ||  ||  |   || || |    ||||  ||| |  | |     |  |  || |||                                   
GTTGTTTACCAACTTTGGCTACAATTCCAGTCTGGATTGGTCTCTACCAAGCTTTATCAAATGTGGCAAATGAGgtaa---taatt-aattatataaacttttatcatttgagcggagattttgatggacaaattacacacagaaaatatgattttttgttaattatggaaaatctttaatttgaag

upper sequence: GRMZM2G110063_T01 (Zea mays), 5'ss of exon 6
lower sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 5
GATGTTTTCCAACATTGGCAACAATACCTGTATGGATTGGTCTTTACCAGGCACTTTCAAATGTAGCAAATGAGgtaagtt--tagtccaactactttaagcttgcttgattaagtgttttttttgggctgagtgtgttctatgatgtgaag-----------------------
||||||| ||||| ||||| |||||||| || ||||| ||| | || || || ||||||||||| ||||||||||| | |   ||   || ||   ||| |     ||||    ||    || |   || || |   || | | |||  ||                        
GATGTTTCCCAACTTTGGCCACAATACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaatatctcatctctcttatgtgatgttgac--ggttggattctaatgcagattaaattgt-ttatgctaactatctcaacctttttactcaaag