1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattcaatgtcaacctgctaactatttactcaccgtttattttaacaggttagtggattatttattttctcctactttactgctgcag
species | Zea mays |
transcript | GRMZM2G109383_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAATACAAACGACA-TCTCTGAATACCTCATCTCTGAAGACCTACCAGAT NEST: gi|211503092|gb|FL335421.1|FL335421
genomic: TAATACAA-CGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcag-
EST: TAATACAAACGACA-TCTCTGAATACCTCATCTCTGAAGACCTACCAGAT NEST: gi|211163859|gb|FL345453.1|FL345453
genomic: TAATACAA-CGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcag-
EST: TAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCCAGAT GT-GATATTTCTGGTGTCGGTGTCAACAGCTTCAGTGGACCTGAAGGCCCEST: gi|31349456|gb|CD433813.1|CD433813
genomic: TAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACC-AGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCCEST: gi|211464475|gb|FL313832.1|FL313832
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCCEST: gi|32921738|gb|CF026550.1|CF026550
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|211103216|gb|FL316257.1|FL316257
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAAGCGCCEST: gi|31355827|gb|CD440184.1|CD440184
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCCEST: gi|211126281|gb|FL366445.1|FL366445
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGATGGCCCTEST: gi|211213801|gb|FL354211.1|FL354211
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|67035308|gb|CO463841.1|CO463841
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCCEST: gi|211198397|gb|FL354123.1|FL354123
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCEST: gi|211038815|gb|FL358195.1|FL358195
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTT-CTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCCEST: gi|211040491|gb|FL324026.1|FL324026
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGGTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGEST: gi|211446296|gb|FL306989.1|FL306989
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGGTGTCGGTGTCACCAGCTTCAGTGGACCTGAAG-CCCCEST: gi|60351626|gb|DN218599.1|DN218599
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|211087099|gb|FL367278.1|FL367278
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGGATATTNNCTGT-GTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCEST: gi|211160953|gb|FL361295.1|FL361295
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTG-ATATTT-CTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|149013083|gb|EE042782.2|EE042782
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|211016345|gb|FL361191.1|FL361191
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCCEST: gi|211001599|gb|FL335869.1|FL335869
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCCEST: gi|19822139|gb|BQ048163.1|BQ048163
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCCEST: gi|67025909|gb|CO454658.1|CO454658
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|148945839|gb|EC891128.2|EC891128
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|31353391|gb|CD437748.1|CD437748
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: ATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GCTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCCEST: gi|211306566|gb|FL359152.1|FL359152
genomic: ATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAEST: gi|211153939|gb|FL327667.1|FL327667
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGA
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCCEST: gi|211258211|gb|FL352267.1|FL352267
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCCEST: gi|60351436|gb|DN218409.1|DN218409
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|31353888|gb|CD438245.1|CD438245
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCCEST: gi|149109221|gb|EE190083.2|EE190083
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|211088149|gb|FL307534.1|FL307534
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTTCTGTTGTCGGGGTCAACAGCEST: gi|211125281|gb|FL351286.1|FL351286
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTT-CTGTTGTCGGTGTCACCAGC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGGTGTCGGTGTCACCAGCTTCAGTGGACCCNGA-GGCCCEST: gi|149017022|gb|EE045668.2|EE045668
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCC-GAAGGCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|67025687|gb|CO454436.1|CO454436
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGAC-TACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCAAANGCNCCEST: gi|211133200|gb|FL313078.1|FL313078
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCCAGCT-CAGTGGACCCGAAGGGCCEST: gi|31356494|gb|CD440851.1|CD440851
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACC-AGCTTCAGTGGACCCGAAGGCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCCEST: gi|67041650|gb|CO467905.1|CO467905
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCCEST: gi|211040466|gb|FL323564.1|FL323564
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCTEST: gi|84980113|gb|DW530462.1|DW530462
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTTACCAGCTTCAGTGGACCTGAAGGCCCCEST: gi|148945380|gb|EC890603.2|EC890603
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|211101215|gb|FL335616.1|FL335616
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAAGCCCCEST: gi|149099504|gb|EE185542.2|EE185542
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCEST: gi|149014023|gb|EE043541.2|EE043541
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattcaatgtcaacctgctaactatttactcaccgtttattttaacaggttagtggattatttattttctcctactttactgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA