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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattcaatgtcaacctgctaactatttactcaccgtttattttaacaggttagtggattatttattttctcctactttactgctgcag

Basic information

species Zea mays
transcript GRMZM2G109383_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109383_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 6
CATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattcaatgtcaacctgctaactatttactcaccgtttattttaacaggttagtggattatttatttt-ctcctactttactgct-gcag-----
||||| ||||||||| ||||| |||||||| ||||| || ||||| ||||||||||||||||||||  ||||||| |||||| | |||||||| ||||||||| || |  | |   || || ||  | |||  |    |||| |  |  |||| || || | ||| | |||  |||||   ||  |||   ||      
CATGGAAAATGGTGGACCTGCCCCTGAATCGGTTACTGATAAGATCTTCTCTAATACAACGACAATTACTGAATATCTCATCGCGGAAGACCTTCCAGATgtaagagttgacgctgacttgttagtt-tttgttgtttgttt-tgctcccagggtattgaaatatatgtttcactcctttattcttgcccacatcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211503092|gb|FL335421.1|FL335421
EST:     TAATACAAACGACA-TCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         N
genomic: TAATACAA-CGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcag-
EST: gi|211503092|gb|FL335421.1|FL335421
EST:     TAATACAAACGACA-TCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         N
genomic: TAATACAA-CGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcag-
EST: gi|211163859|gb|FL345453.1|FL345453
EST:     TAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCCAGAT                         GT-GATATTTCTGGTGTCGGTGTCAACAGCTTCAGTGGACCTGAAGGCCC
genomic: TAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACC-AGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCC
EST: gi|31349456|gb|CD433813.1|CD433813
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211464475|gb|FL313832.1|FL313832
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|32921738|gb|CF026550.1|CF026550
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211103216|gb|FL316257.1|FL316257
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAAGCGCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|31355827|gb|CD440184.1|CD440184
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211126281|gb|FL366445.1|FL366445
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGATGGCCCT
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211213801|gb|FL354211.1|FL354211
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|67035308|gb|CO463841.1|CO463841
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211198397|gb|FL354123.1|FL354123
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTT-CTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCC
EST: gi|211038815|gb|FL358195.1|FL358195
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211040491|gb|FL324026.1|FL324026
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGGTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG
EST: gi|211446296|gb|FL306989.1|FL306989
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGGTGTCGGTGTCACCAGCTTCAGTGGACCTGAAG-CCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|60351626|gb|DN218599.1|DN218599
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211087099|gb|FL367278.1|FL367278
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGGATATTNNCTGT-GTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTG-ATATTT-CTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCC
EST: gi|211160953|gb|FL361295.1|FL361295
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|149013083|gb|EE042782.2|EE042782
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211016345|gb|FL361191.1|FL361191
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211001599|gb|FL335869.1|FL335869
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|19822139|gb|BQ048163.1|BQ048163
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|148945839|gb|EC891128.2|EC891128
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|31353391|gb|CD437748.1|CD437748
EST:     ATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GCTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: ATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211306566|gb|FL359152.1|FL359152
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGA
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGA
EST: gi|211153939|gb|FL327667.1|FL327667
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|67041650|gb|CO467905.1|CO467905
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211258211|gb|FL352267.1|FL352267
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAG-CCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|31353888|gb|CD438245.1|CD438245
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|149109221|gb|EE190083.2|EE190083
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|60351436|gb|DN218409.1|DN218409
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211088149|gb|FL307534.1|FL307534
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTTCTGTTGTCGGGGTCAACAGC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTT-CTGTTGTCGGTGTCACCAGC
EST: gi|211125281|gb|FL351286.1|FL351286
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGGTGTCGGTGTCACCAGCTTCAGTGGACCCNGA-GGCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCC-GAAGGCCC
EST: gi|149017022|gb|EE045668.2|EE045668
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|67025687|gb|CO454436.1|CO454436
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGAC-TACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCAAANGCNCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211133200|gb|FL313078.1|FL313078
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCCAGCT-CAGTGGACCCGAAGGGCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACC-AGCTTCAGTGGACCCGAAGGCCC
EST: gi|31356494|gb|CD440851.1|CD440851
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|67025909|gb|CO454658.1|CO454658
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211040466|gb|FL323564.1|FL323564
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCT
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|84980113|gb|DW530462.1|DW530462
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTTACCAGCTTCAGTGGACCTGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|148945380|gb|EC890603.2|EC890603
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|211101215|gb|FL335616.1|FL335616
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAAGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|149099504|gb|EE185542.2|EE185542
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
EST: gi|149014023|gb|EE043541.2|EE043541
EST:     CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGAT                         GTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC
genomic: CTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 225

CATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 309

CATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 261

CATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 552

CATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattca ... actgctgcagGTTGATATTTCTGTTGTCGGTGTCACCAGCTTCAGTGGACCCGAAGGCCCCTTTGATGTGGATGTTTTTGACTCTAGTGTAGATTACATAAAGTTAATGA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGGGAAATGGTGGGCCTGCTCCTGAATCTGTTACCGACAAGATTTTCTCTAATACAACGACAATCTCTGAATACCTCATCTCTGAAGACCTACCAGATgtatgattcaatgtcaacctgctaactatttactcaccgtttattttaacaggttagtggattatttattttctcctactttactgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA