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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTTgtatgtatctgaagattgaacttctttggatacattttaactgtgaactctgaatgaaatggtaacaacatgaaaatttgctaatgctttaatgtag

Basic information

species Zea mays
transcript GRMZM2G108829_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g47220.1 (Oryza sativa), 5'ss of exon 5
ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTTgtatgtatctgaagattgaacttctttggatacattttaactgtgaactctgaatgaaatggtaacaacatgaaaatttgctaatgctttaatgtag-----------------
||||||  |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || | | | |||   | | |   | | |    |     ||||  |  ||     | || |  || ||   | |    |                  
ATTCAAAATGATTAAGGAAGTTGGTGACGGGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAAAATGGTGAAGTTgtatgtatctgaagat--aaatccataggaggaaatatgcatttcatacttttgcaaaatattcccagtgaaataaataactgat-tgtaagcaaaatgtgcactgatctatag

upper sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA09G34610.1 (Glycine max), 5'ss of exon 2
ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTTgtatgtatctgaagattgaacttctt----tggatacattttaactgtgaactctgaatgaaatggtaacaacatgaaaatttgctaatgctttaatgtag
 | |||||| ||||||||| |||| |||||||| || |||| ||| ||| | ||||| ||||| || | ||||||||||||| ||||      |||||  |  |     ||| |  |||| || | |  |   ||    ||||  ||| ||  ||  || ||||                
GTACAAGTTAATTAAGGAAATTGGTGATGGGACGTTTGGGACTGTCTGGAGAGCTATTAATAAGCAAACTGGTGAAGTTgtaagtatgctttaattgacataatgaaggtggctctatttcaagt-tagatgttgtcctaaatcctaataagttgttaaattgcag--------------

upper sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA01G35190.1 (Glycine max), 5'ss of exon 2
ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTTgtatgtatctgaagattgaacttctttggatac----attttaactgtgaactctgaatgaaatggtaacaacatgaaaatttgctaatgctttaatgtag
 | |||||| |||||||||||||| ||||||||||| |||||||| ||| | ||||| ||||| || |  |||||||||||| ||||      | |||  |  |   | ||     |||| || | || |   ||    ||||  ||| ||  || ||| ||||                
GTACAAGTTAATTAAGGAAGTTGGTGATGGGACTTTTGGGAGTGTCTGGAGAGCTATTAATAAGCAAACCGGTGAAGTTgtaagtatgctttaactgacatgataaaggtatctctatttcaagt-tggatgttgtcctaaatcctaataagttgtaaaattgcag--------------

upper sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G17580.1 (Glycine max), 5'ss of exon 2
ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTTgtatgtatctgaagattgaact--tctttggatacattttaactgtgaactctgaatgaaatggtaacaacatgaaaatttgctaatgctttaatgtag
 | |||||| |||||||||||||| ||||| || || |||||||| ||| | || || ||||| || | ||||||||||||| |||| |  ||| |  | |  |    | |   |  ||   ||||   |||     || | ||   || || | |                      
GTACAAGTTAATTAAGGAAGTTGGTGATGGAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgtttagagtagaatgatacgcgaagttacattgtgtgtgttttct---ctaatttgtcctaatattacag---------------------

upper sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT4G19110.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTTgtatgtatctgaagattgaacttctttggatacattttaactgtgaactctgaa-tgaaatggtaacaacatgaaaatttgctaatgctttaatgtag
 | |||||| ||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||||| ||||  |||||||| ||| ||  ||     ||| |   || |  ||   |  |    |     |||| | |    |  |||| |  ||||| |||      ||          
GTACAAGTTAATTAAAGAGGTTGGTGATGGAACTTTTGGTAGTGTTTGGCGAGCTATAAATAAGCAGACGGGTGAAGTCgtaagttacttt--cttggagagctatctat---tactggtagaatgttctgtacttggtttttaactaagtgaaattttctatgagcag--------

upper sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv02s0033g01110.t01 (Vitis vinifera), 5'ss of exon 2
ATTCAAGTTGATTAAGGAAGTTGGCGATGGGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTTgtatgtatctgaagattgaacttctttggatacattttaactgtgaactctgaatgaaatggtaacaacatgaaaatttgctaatgctttaatgtag
 |  | | | || ||||||||||| ||||||||||| || ||||| ||||| || |||||||| |||| ||||||||||||| | | |  | | |   | || ||    | | ||  |||||         | |||     ||  |    |    | | ||  || || ||     
GTATACGATAATCAAGGAAGTTGGTGATGGGACTTTTGGAAGTGTTTGGCGAGCAATAAATAAGCAGACTGGTGAAGTTgtaagcagc--atgttcatagttttt--attgctttgaaactgaagg---aaattgattctatataagtcagggtttgttcttttgtttcaacag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47961778|gb|CN844487.1|CN844487
EST:     GGACTTTCGGNAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTT                         GTTGCTGTTAAGAAAATGAAGAAAAAGTATTATTCTTTTGAGGAATGTATG
genomic: GGACTTTCGGGAGTGTATGGCGTGCTATAAATAAACAGAATGGTGAAGTTgtatgtatct ... tttaatgtagGTTGCTGTTAAGAAAATGAAGAAAAAGTATTATTCTTTTGAGGAATGTATG