1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAGgtatggacatgcattgtgagccttatatgttccttttggtgacttgtttactaaatttttgaaaactttgtag
species | Zea mays |
transcript | GRMZM2G107867_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAG GCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGTEST: gi|60341419|gb|DN208392.1|DN208392
genomic: TTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAGgtatggacat ... aactttgtagGCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGT
EST: TTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAG GCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGTEST: gi|91872727|gb|EB402684.1|EB402684
genomic: TTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAGgtatggacat ... aactttgtagGCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGT
EST: TTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAG GCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGTEST: gi|32930411|gb|CF035223.1|CF035223
genomic: TTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAGgtatggacat ... aactttgtagGCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGT
EST: TTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAG GCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGTEST: gi|211210980|gb|FL114022.1|FL114022
genomic: TTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAGgtatggacat ... aactttgtagGCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGT
EST: TAACAAGAACCAT-TGTGTGAATCACTGTGCAGCAGACTTTAAAATGAG GCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGTEST: gi|211186173|gb|FL452294.1|FL452294
genomic: TAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAGgtatggacat ... aactttgtagGCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGT
EST: TTACCAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAG GCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGTEST: gi|211440538|gb|FL230375.1|FL230375
genomic: TTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAGgtatggacat ... aactttgtagGCAACTGTTGCATATTATTTACTATTGGACAATCGGTTTAGAGCAACTAGT
EST: TTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAG GCAACTGTTGCATATTATTTACTATTGGGACAATCGGTTTAGAGCAACTAG
genomic: TTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAGgtatggacat ... aactttgtagGCAACTGTTGCATATTATTTACTATTGG-ACAATCGGTTTAGAGCAACTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAACCATGTGTGTGAATCACTGTGCAGCAGACTTCAAAATGAGgtatggacatgcattgtgagccttatatgttccttttggtgacttgtttactaaatttttgaaaactttgtag
- - - - - - - - - - - - - - - - - - - - - - AAGAAC