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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCACAATTAGGGAAATTCGGGAGCATCAATGGTTCCAGATTCGCCTTCCACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATGgtatgtcctctcagttataagtggctatactgctattgcatgcttgtgttcaaagtttctaattttgtccactaatatgtaggaaaaagtagatgtgtat...

Basic information

species Zea mays
transcript GRMZM2G107867_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107867_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g37800.1 (Oryza sativa), 5'ss of exon 6
AATCACAATTAGGGAAATTCGGGAGCATCAATGGTTCCAGATTCGCCTTCCACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATGgtatgtcctctca-gttataagtggctatactgctattgcatgcttgtgttcaaagtt-tctaattttgtccactaata--tgtaggaaaaagtagatgtgtat
|||||||||| | |||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||  |||| |||||||||||||||  |  | |||  || | |  |  |       || || ||     | |  | | |  | ||||||| |  |   |||  | |||   |   || ||      
AATCACAATTCGTGAAATTCGAGAGCATCAATGGTTTCAGATTCGCCTTCCTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtactttgtgtcacattcttaacgagttgttcattaatgtatcaaactttatatactaatataattttcttgagatatacttatagagtatgataaataa----

upper sequence: GRMZM2G107867_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g17980.2 (Oryza sativa), 5'ss of exon 6
AATCACAATTAGGGAAATTCGGGAGCATCAATGGTTCCAGATTCGCCTTCCACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATGgtatgtcctctcagttataagtggctatactgctattgcatgcttgtgttcaaagtttctaattttgtccactaatatgtaggaaaaagtagatgtgtat-----
|||||||||| | |||||||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||  |||| |||||||||||||||  |||| |  || | |  |   ||    | | || |||   ||| | |||| ||| |    |  |  | |  | |  ||  | |  || | | ||||     
AATCACAATTCGTGAAATTCGAGAGCATCAGTGGTTTCAGATTCGCCTTCCTCGTTACTTAGCAGTGCCTCCACCAGACACAGCACAGCAAGCCAAAATGgtacttcctttgtgtcaca--ttcttaacgagttgtt-catttatgtat-caaattttatctactaatgtaattttcttgagatatacttata-gagtataataa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661445|gb|BM501401.1|BM501401
EST:     CACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATG                         ATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAAC
genomic: CACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATGgtatgtcctc ... atttttgaagATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAAC
EST: gi|60341419|gb|DN208392.1|DN208392
EST:     CACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATG                         ATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAAC
genomic: CACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATGgtatgtcctc ... atttttgaagATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAAC
EST: gi|91872727|gb|EB402684.1|EB402684
EST:     CACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATG                         ATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAAC
genomic: CACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATGgtatgtcctc ... atttttgaagATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAAC
EST: gi|32930411|gb|CF035223.1|CF035223
EST:     CACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATG                         ATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAAC
genomic: CACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATGgtatgtcctc ... atttttgaagATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAAC
EST: gi|211186173|gb|FL452294.1|FL452294
EST:     CAAGCCAAAAATG                         ATTGATGAAGATACACTTCGAGATG-TGTTTAATATGGGATTTACCAAGA
genomic: CAAGCC-AAAATGgtatgtcctc ... atttttgaagATTGATGAAGATACACTTCGAGATGTTG-TTAATATGGGATTTAACAAGA
EST: gi|211440538|gb|FL230375.1|FL230375
EST:     CACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATG                         ATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAAC
genomic: CACGTTACTTGGCAGTGCCTCCACCAGATACGACACAACAAGCCAAAATGgtatgtcctc ... atttttgaagATTGATGAAGATACACTTCGAGATGTTGTTAATATGGGATTTAACAAGAAC