Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcagtgtatttgaactttgaaacaaagcggtataaaagagttcttatcatttttgttcaattatcataccattttagcgtctttgtctcag

Basic information

species Zea mays
transcript GRMZM2G107731_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107731_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g17930.1 (Oryza sativa), 5'ss of exon 4
CCATTGCAGTCAAAGATAGACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAGgtatgt--tcagtgtatttgaactttgaaacaaagcggtataaaagagttcttatcatttttgttcaattatcataccattttagcgtctttgtctcag
| |||||||| ||||| | |||||| |||||||||||||| |||||||||||||| |||||||||||||||||     |||||||  ||  ||||||      | || ||         || ||| |||||||||| ||| ||| | |||||||||   || |||||
CTATTGCAGTTAAAGAGAAACTAGAGTCTCTTTGTAGGGAGTTTCAGCGTCAAAATAAAATGCTAAAGgtatggaacaagtgtatc-gagttttgaagtgt--ctgttta---------ttttcacttttgttcaactataatatc-ttttagcgttgatgactcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71436912|gb|DR817962.1|DR817962
EST:     GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAG                         GAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAAATG
genomic: GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcag ... tttgtctcagGAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATTG
EST: gi|149081200|gb|EE170309.2|EE170309
EST:     GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAG                         GAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATTG
genomic: GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcag ... tttgtctcagGAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATTG
EST: gi|149027108|gb|EE046399.2|EE046399
EST:     GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAG                         GAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATTG
genomic: GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcag ... tttgtctcagGAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATTG
EST: gi|148994670|gb|EE034191.2|EE034191
EST:     GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAG                         GAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATTG
genomic: GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcag ... tttgtctcagGAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATTG
EST: gi|148961119|gb|EE011825.2|EE011825
EST:     GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAGG                         GAAGAGTGCCAAA
genomic: GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcag ... tttgtctcagGAAGAGTGCCAAA
EST: gi|31354731|gb|CD439088.1|CD439088
EST:     GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAG                         GAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATTG
genomic: GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcag ... tttgtctcagGAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATTG
EST: gi|60358220|gb|DN225193.1|DN225193
EST:     GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAG                         GAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATTG
genomic: GACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGCTAAAGgtatgttcag ... tttgtctcagGAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATTG
EST: gi|91055771|gb|EB166189.1|EB166189
EST:     ACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATGGCTAA-G                         GAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATT
genomic: ACTAGAATCTCTTTGTAGGGAATTTCAGCGTCAAAACAAAATG-CTAAAGgtatgttcag ... tttgtctcagGAAGAGTGCCAAAGGGTATCGACAGAGGGACAGAACATGCGTACGGAATT