1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CATGCGTCTTCAACATATCATCATTCTGCAGAACAAGATCGATCTTATCCAGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactcagtgtgccttcgtggcactattcaatacttatcagcatctctcttgttatattgtcttctttttcatggtctgattctttttatgctcatttgaccag
species | Zea mays |
transcript | GRMZM2G107654_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAAEST: gi|32934438|gb|CF039250.1|CF039250
genomic: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgaccagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAA
EST: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAAEST: gi|22491498|gb|BU051421.1|BU051421
genomic: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgaccagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAA
EST: GGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAAEST: gi|91876669|gb|EB406626.1|EB406626
genomic: GGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAA-TTCATCCAGgtcaatactc ... atttgaccagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAA
EST: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAAEST: gi|78103988|gb|DV522406.1|DV522406
genomic: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgaccagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAA
EST: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAA-TTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAAEST: gi|32930840|gb|CF035652.1|CF035652
genomic: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgaccagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAA
EST: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAAEST: gi|31357361|gb|CD441718.1|CD441718
genomic: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgaccagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAA
EST: AAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAAEST: gi|32933324|gb|CF038136.1|CF038136
genomic: AAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgaccagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAA
EST: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAAEST: gi|60397288|gb|DN230104.1|DN230104
genomic: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgaccagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAA
EST: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGEST: gi|87151873|gb|DY396662.1|DY396662
genomic: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgaccagGGAACAATAGCTGAAGGTGCACCTGTGG
EST: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAG GGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAAEST: gi|19351461|gb|BM895993.1|BM895993
genomic: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgaccagGGAACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAAA
EST: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAG GGACACA-TAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAA
genomic: AGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactc ... atttgaccagGGA-ACAATAGCTGAAGGTGCACCTGTGGTGCCTATATCCGCCCAGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCGTCTTCAACATATCATCATTCTGCAGAACAAGATCGATCTTATCCAGGAAAGCGCAGCGATGAATCAGCATGAAGCAATCCAAAAATTCATCCAGgtcaatactcagtgtgccttcgtggcactattcaatacttatcagcatctctcttgttatattgtcttctttttcatggtctgattctttttatgctcatttgaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA