1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCACTGTTGTGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAGgtcatctctctccactaacacttgtgtttggaatctctatccaacattttctaatattgcattgtcattccag
species | Zea mays |
transcript | GRMZM2G107639_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAG AGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAATEST: gi|67030337|gb|CO459086.1|CO459086
genomic: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAGgtcatctctc ... gtcattccagAGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAAT
EST: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAG AGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACNATEST: gi|148947797|gb|EC893285.2|EC893285
genomic: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAGgtcatctctc ... gtcattccagAGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAAT
EST: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAG AGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAATEST: gi|148963140|gb|EE014107.2|EE014107
genomic: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAGgtcatctctc ... gtcattccagAGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAAT
EST: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAG AGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAATEST: gi|149112179|gb|EE295100.2|EE295100
genomic: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAGgtcatctctc ... gtcattccagAGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAAT
EST: GAATCCGGGGAACCCCTCTGGAGCTTTTATTCTCA-GGCCTATGCTTGAG AGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAATEST: gi|149037081|gb|EE155270.2|EE155270
genomic: GAATCCGGGGAACCCCTCTGGAGCTTTTATTC-CAAGGCCTATGCTTGAGgtcatctctc ... gtcattccagAGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAAT
EST: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAG AGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAATEST: gi|149084340|gb|EE173781.2|EE173781
genomic: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAGgtcatctctc ... gtcattccagAGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAAT
EST: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAG AGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGGTGACAATEST: gi|76286951|gb|DV026519.1|DV026519
genomic: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAGgtcatctctc ... gtcattccagAGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAAT
EST: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAG AGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTTGACA-EST: gi|50325408|gb|CO520534.1|CO520534
genomic: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAGgtcatctctc ... gtcattccagAGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTT-GACAA
EST: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAG AGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAATEST: gi|67011573|gb|CO440322.1|CO440322
genomic: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAGgtcatctctc ... gtcattccagAGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAAT
EST: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAG AGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAAT
genomic: TGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAGgtcatctctc ... gtcattccagAGGATTTCAGATCTGTGCAAAAATGCTGGTGCATGGCTTGTGGTTGACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAAGGTTCTGAAAGAAAATGAGCCTATCCCTAAACTTGTCACTGTTGTGAATCCGGGGAACCCCTCTGGAGCTTTTATTCCAAGGCCTATGCTTGAGgtcatctctctccactaacacttgtgtttggaatctctatccaacattttctaatattgcattgtcattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT