1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaaacatttcatcagaaatcaaatggttactttagtcataaattgttcctgtgacctaatactggaattaagacttacagcaagttatgtgaatgatgacag
species | Zea mays |
transcript | GRMZM2G107575_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGEST: gi|86466680|gb|DY233050.1|DY233050
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGEST: gi|22542695|gb|BU093133.1|BU093133
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
EST: TCCTGGATAAG CCATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGEST: gi|211255132|gb|FL091665.1|FL091665
genomic: TCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGEST: gi|91053272|gb|EB163690.1|EB163690
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATEST: gi|78085933|gb|DV514326.1|DV514326
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGAT
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGEST: gi|60358131|gb|DN225104.1|DN225104
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
EST: GATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGEST: gi|14203857|gb|BG837534.1|BG837534
genomic: GATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGEST: gi|16918239|gb|BM073651.1|BM073651
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGG-AAAATAGANTAGAACAGAEST: gi|149016909|gb|EE045638.2|EE045638
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGA-TAGAACAGA
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGEST: gi|76018012|gb|DT945182.1|DT945182
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGEST: gi|71427887|gb|DR808937.1|DR808937
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAG
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGEST: gi|67010361|gb|CO439110.1|CO439110
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGGATGGAAAAATAGATAGAACAGAEST: gi|86468276|gb|DY234646.1|DY234646
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCA-GGATGGAAAAATAGATAGAACAGA
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAGEST: gi|78085932|gb|DV514325.1|DV514325
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
EST: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAG ACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
genomic: AATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaa ... atgatgacagACATTTTCAGATGCTGATGCAAATCAGGATGGAAAAATAGATAGAACAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAAGCAGATGTTAATTGCTCTCCTAGGAGAATCAGAAATGAGGCTATCTGATGAGATCATTGAGACAATCCTGGATAAGgttcttttaaacatttcatcagaaatcaaatggttactttagtcataaattgttcctgtgacctaatactggaattaagacttacagcaagttatgtgaatgatgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA