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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTAAATTTGGTGCAGTGTGCAAGTTCCATCATCCCCGTGTGAGATCACAGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgttaaacccttcactctttctgtttcattttgttttagaattacactgtttctgttgtattgatcctttgtttagacattttatccattatat...

Basic information

species Zea mays
transcript GRMZM2G107491_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107491_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g68860.3 (Oryza sativa), 5'ss of exon 5
TTGTAAATTTGGTGCAGTGTGCAAGTTCCATCATCCCCGTGTGAGATCACAGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt--aaacccttcactctttctgtttcattttgttttagaattacactgtttctgttgtattgatcctttgtttagacatt-ttatccattatat
 |||||||||||||| ||||||||||||||||||||||| ||| |||||  |||  |||| ||||||||||| |||||| ||||||||||| ||||||| |||||||  |  ||||| ||   |  || |||| || |     |||   ||    |  |  ||||  |   |||  ||   |   |||  ||   |||| || 
CTGTAAATTTGGTGCGGTGTGCAAGTTCCATCATCCCCGGGTGCGATCAATGCCTACTCCAGATTGTGTCTTGAGTCCAGTGGGTCTTCCACTACGTCCGgtaagttactacaaacctttttgtacttatgttccagtgacaattat--ttgtgtt-ctcatgttccacgtatcactttaatgttcatggttgatcattgtac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32842295|gb|CD981976.1|CD981976
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA                         GGTGAAGAACTGTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: gi|32839671|gb|CD979352.1|CD979352
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA                         GGTGAAGAACTGTGCAAATTCTATTCTCGCTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: gi|32836606|gb|CD976284.1|CD976284
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA                         GGTGAAGAACTGTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: gi|32920863|gb|CF025675.1|CF025675
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA                         GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: gi|32842543|gb|CD982224.1|CD982224
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA                         GGTGAAGAACTGTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: gi|24934304|gb|CA452522.1|CA452522
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA                         GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: gi|32921366|gb|CF026178.1|CF026178
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA                         GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: gi|32837496|gb|CD977174.1|CD977174
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA                         GGTGAAGAACTGTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: gi|76290171|gb|DV029739.1|DV029739
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA                         GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: gi|32921013|gb|CF025825.1|CF025825
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA                         GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: gi|32920651|gb|CF025463.1|CF025463
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCA                         GGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
EST: gi|32838677|gb|CD978355.1|CD978355
EST:     AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGCCTTCCAATACGTCCA                         GGTGAAGAACTGTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC
genomic: AGCCCCCTCCGGATTGTGTCTTAAGTCCAATGGGTCTTCCAATACGTCCAgtaagttgtt ... tggtttttagGGTGAAGAACTTTGCAAATTCTATTCTCGTTATGGCATCTGCAAGTTCGGC