1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTCATAGTCCAGACCACATTGAAAGTGTCGAGCAGACAAAGAACATGCTTTACAGgtactgcttgatttttttgaaatatttccttcttgttcaagaccttttttttgctttcaaatgtcatgatctgttagtttgtcgctaactgttctggtcattattaatgaatgcttagcctatcttggcatttttgtgcgaaaatcattctttggctaataacacaatttgcag
species | Zea mays |
transcript | GRMZM2G107309_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGCAGACAAAGAACATGCTTTACAG TTACTTCACTTCGGATACTTACGCAAATGGACATTCAGCATGTGCTGCCAAEST: gi|78112912|gb|DV531306.1|DV531306
genomic: GAGCAGACAAAGAACATGCTTTACAGgtactgcttg ... caatttgcagTTACTTCACTTCGGATACTTACGCAAATGGACATTCAGCATGTGCTGCCAA
EST: AGTCCAGACCACATTGAAAGTGTCGAGCAGACAAAGAACATGCTTTACAG TTACTTCACTTCGGATACTTACGCAAATGGACATTCAGCATGTGCTGCCAAEST: gi|6564072|gb|AW231694.1|AW231694
genomic: AGTCCAGACCACATTGAAAGTGTCGAGCAGACAAAGAACATGCTTTACAGgtactgcttg ... caatttgcagTTACTTCACTTCGGATACTTACGCAAATGGACATTCAGCATGTGCTGCCAA
EST: AGTCCAGACCACATTGAAAGTGTCGAGCAGACAAAGAACATGCTTTACAG TTACTTCACTTCGGATACTTACGCAAATGGACATTCAGCATGTGCTGCCAA
genomic: AGTCCAGACCACATTGAAAGTGTCGAGCAGACAAAGAACATGCTTTACAGgtactgcttg ... caatttgcagTTACTTCACTTCGGATACTTACGCAAATGGACATTCAGCATGTGCTGCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATAGTCCAGACCACATTGAAAGTGTCGAGCAGACAAAGAACATGCTTTACAGgtactgcttgatttttttgaaatatttccttcttgttcaagaccttttttttgctttcaaatgtcatgatctgttagtttgtcgctaactgttctggtcattattaatgaatgcttagcctatcttggcatttttgtgcgaaaatcattctttggctaataacacaatttgcag
- - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAC