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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaacttctgtctcatcttgctattataagcgatctgatattgcttcttttatgtatttaaattaagatcatttttaaaaattgtaattgtgttag...

Basic information

species Zea mays
transcript GRMZM2G107106_T06
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868981_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g41010.4 (Oryza sativa), 5'ss of exon 7
TGATAATGATTGGGAGTGTCCAAATTGCCATAACATCAACTTTGGCTTTCGCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaacttctgtctcatcttgctattataag---cgatctg--atattgcttcttttatgtatttaaattaagatcatttttaaaaattgtaattgtgttag
||||||||||||| | || || |||||| | ||||| |||||||  || || ||||||||||| |||||||||||||| ||||| ||||||| |||||||||   ||| |     ||  |  | ||  |  |||   | | ||    |||| || ||  ||  | | | || ||   |  ||| || ||||   || |  ||   
TGATAATGATTGGAAATGCCCTAATTGCAACAACATTAACTTTGCATTCCGGACAGTCTGTAACATGAGAAAGTGCAATACACCAAGACCTGAAAACCAGgt--acaattctccacttcttgtacttgtgcaagttcccacctattgtattactactactaaat-tatgaaatatctttctttctataaatctaaaattggtc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929362|gb|CF034174.1|CF034174
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|38502536|gb|CF972396.1|CF972396
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|60354809|gb|DN221782.1|DN221782
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|71765407|gb|DR963344.1|DR963344
EST:     GCCCAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATTTAAGTTTGATGGTTTAAGGGGCTC--
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|71760238|gb|DR958175.1|DR958175
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|32929980|gb|CF034792.1|CF034792
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|86469486|gb|DY235856.1|DY235856
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|60336833|gb|DN203806.1|DN203806
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTCTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA
EST: gi|71761651|gb|DR959588.1|DR959588
EST:     GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAG                         GGATCTAAGTTTGATGGTTTAAGGGGCTCAA
genomic: GCACAGTCTGTAATATGAGAAAGTGCAACACACCTAGACCTGCAAACCAGgtttgcaact ... ctttgtgcagGGATCTAAGTCTGATGGTTTAAGGGGCTCAA