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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCCAATTCTTTCACGCATCATAGATGGGACGCTGTGCTATGATAGACATGGTCCCCCATTCAGTTCCTTCATCTCTTTATTCAGCCATAATTCTGAGgtgaggccattagtatcgtggtcagttttagttgttctctttgtgtcgactttgagattcgctattctatactgttgctcattaacaattttgaccacag

Basic information

species Zea mays
transcript GRMZM2G107101_T05
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107101_T05 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g08700.1 (Oryza sativa), 5'ss of exon 6
ACATCCAATTCTTTCACGCATCATAGATGGGACGCTGTGCTATGATAGACATGGTCCCCCATTCAGTTCCTTCATCTCTTTATTCAGCCATAATTCTGAGgtgaggccattagtatcgtggtcagtt--------ttagttgttctctttgtgtcgactttgagattcgctattctatac-------tgttgctcattaacaattttgaccacag--------------------------------------------
 ||||| ||||| |||||||||||||||||||| ||  | ||||||||| |||||  ||| ||||  ||||||||||||||||| ||||||| ||||||||| |||||  || | |  |||| ||||        || |||  | ||| |||||    |  ||  ||  || | || | |       | ||     | |||  |  ||   | ||                                            
GCATCCGATTCTGTCACGCATCATAGATGGGACACTCAGTTATGATAGAAATGGTTTCCCGTTCATGTCCTTCATCTCTTTATTTAGCCATACTTCTGAGgtaaggcccctactctaatggttagttccaatttattggttcatttctctgtgtttgataagattttgcctctgctgtgcatttcaatattatatctaaactgtgctgcttatagcttatcaaactactcttgctcataaagatgcaacttttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89106449|gb|DY576666.1|DY576666
EST:     CCCATTCAGTTCCTTCATCTCTTTATTCAGCCATAATTCTGAG                         CAAGAGTACTCAGAGCAGTGGGCCTTGGCCTGTGGAGAAATTCTTAGGGTC
genomic: CCCATTCAGTTCCTTCATCTCTTTATTCAGCCATAATTCTGAGgtgaggccat ... ttgaccacagCAAGAGTACTCAGAGCAGTGGGCCTTGGCCTGTGGAGAAATTCTTAGGGTC
EST: gi|149079265|gb|EE168237.2|EE168237
EST:     ATGGTCCCCCATTCAGTTCCTTCATCTCTTTATTCAGCCATAATTCTGAG                         N
genomic: ATGGTCCCCCATTCAGTTCCTTCATCTCTTTATTCAGCCATAATTCTGAGgtgaggccat ... ttgaccacag-
EST: gi|149079265|gb|EE168237.2|EE168237
EST:     ATGGTCCCCCATTCAGTTCCTTCATCTCTTTATTCAGCCATAATTCTGAG                         N
genomic: ATGGTCCCCCATTCAGTTCCTTCATCTCTTTATTCAGCCATAATTCTGAGgtgaggccat ... ttgaccacag-
EST: gi|18963998|gb|BM660749.1|BM660749
EST:     AGCCATAATTCTGAG                         CAAGAGTACTCAGAGCAG-GGGCCTTGGCCTGTGGAGAAATTCTTAGGGTC
genomic: AGCCATAATTCTGAGgtgaggccat ... ttgaccacagCAAGAGTACTCAGAGCAGTGGGCCTTGGCCTGTGGAGAAATTCTTAGGGTC