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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCTTTGACTGGCCCAAATTCAGTTGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaattctactcgcgttccacattttcttgctattcagtagtatgctgcccttttaactttgctcatcgtgtttag

Basic information

species Zea mays
transcript GRMZM2G106928_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106928_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g44770.2 (Oryza sativa), 5'ss of exon 6
ATTCCTTTGACTGGCCCAAATTCAGTTGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaattctactcgcgttccacattttcttg-ctattcagtagtatgctgcccttttaactttgctcatcgtgtttag
|||||| ||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||  |||||||| || |   | ||  |||||| ||  |||     |   |  |  | | |||   |||   ||||   |||||
ATTCCTCTGAGTGGCCCAAATTCTGTTGTTGGGAGAGCATTCGTTGTTCATGAGCTTGAAGATGATTTGGGGAAGGgtatgcctaattatattgatgctcagcatttttttttctacgagtttacacacacctcattt---tttatccatcacttttag

upper sequence: GRMZM2G106928_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA12G08650.1 (Glycine max), 5'ss of exon 6
ATTCCTTTGACTGGCCCAAATTCAGTTGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaattctactcgcgttccacattttcttgctattcagtagtatgctgcccttttaactttgctcatcgtgtttag-------------------
|| ||  |  ||||||| |||||||| ||||| ||||| || ||||| ||||||||||| |||||  | || || ||| ||| || |||   |     |  |  | |  ||||  ||   |  | |||||       || |    |||     || ||                   
ATACCACTCTCTGGCCCTAATTCAGTAGTTGGAAGAGCCTTGGTGGTCCATGAGCTTGAGGATGACCTTGGAAAGGgttagc-tatttcattttaatatttatttatatttgcctttagatcctgtgctgtggacaaaattactgtcacaagcttcagcacttgtattttacctaag

upper sequence: GRMZM2G106928_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA11G19840.3 (Glycine max), 5'ss of exon 6
ATTCCTTTGACTGGCCCAAATTCAGTTGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcc---taattctactcgcgttccacattt-tcttgctattcagtagtatgctgcccttttaactttgctca-tcgtgtttag-------------
|| ||  |  ||||||| |||||||| ||||| ||||| || ||||| ||||||||||| |||||  | || || ||| |||    | ||| || |     |  | ||||  |||   || | ||  | ||   |  |   ||  ||   || | || |||               
ATACCACTCTCTGGCCCCAATTCAGTAGTTGGAAGAGCCTTGGTGGTCCATGAGCTTGAGGATGACCTTGGAAAGGgttagctattttattttaatatttatttatatttgcctttggatcctgtgctgtggacctgtcacaagcttcagcacttgtattttatttacttaagtaa

upper sequence: GRMZM2G106928_T01 (Zea mays), 5'ss of exon 6
lower sequence: AT2G28190.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTCCTTTGACTGGCCCAAATTCAGTTGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaattctactcgcgttccacattttcttgctattcagtagtatg-ctgcccttttaactttgctcatcgtgtttag-----------------------------------------------------------------------------
|||||| ||||||| || ||||| |||||||| ||||| ||||||||||| |||||| | |||||  | || || ||| | ||  ||| ||||    |||||  | |   | | ||  | | | | |  ||| ||  | | || | | ||       |                                                                              
ATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCACGAGCTTAAGGATGACCTCGGAAAGGgtaaacc--attatactttacttccaagtctcgatac-atcaattggcacggttgcactaatgaatt-gttaataaaaaggatggctctttcctagcttataaatgtctcttaagccaagttatgatatgatattactctctttgatttgacaaatatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76909357|gb|DV163347.1|DV163347
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|32858163|gb|CD997844.1|CD997844
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|149048831|gb|EE048331.2|EE048331
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|110201685|gb|EC883582.1|EC883582
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|111192574|gb|EE290710.1|EE290710
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTTTTCTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|78120855|gb|DV539239.1|DV539239
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|74245754|gb|DT653668.1|DT653668
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|9254208|gb|BE344676.1|BE344676
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGA
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGA
EST: gi|5871774|gb|AW018245.1|AW018245
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|71430440|gb|DR811490.1|DR811490
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|5871789|gb|AW018260.1|AW018260
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|14701400|gb|BI233818.1|BI233818
EST:     TGTTGGGAGAGCATTTGTGGCTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGC
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGC
EST: gi|110505087|gb|EE017532.1|EE017532
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTTTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|71317884|gb|DR795706.1|DR795706
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|60341036|gb|DN208009.1|DN208009
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|149100116|gb|EE186171.2|EE186171
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTTTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|149105223|gb|EE290711.2|EE290711
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|15082641|gb|BI389325.1|BI389325
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|89247199|gb|DY618985.1|DY618985
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|60355203|gb|DN222176.1|DN222176
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|15199132|gb|BI423675.1|BI423675
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|93014758|gb|EB640278.1|EB640278
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|93282963|gb|EB675227.1|EB675227
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|211051930|gb|FL422540.1|FL422540
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|6056668|gb|AW091073.1|AW091073
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGNGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|71763838|gb|DR961775.1|DR961775
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|78120854|gb|DV539238.1|DV539238
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|76016343|gb|DT943513.1|DT943513
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|60336753|gb|DN203726.1|DN203726
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|78022822|gb|DV491209.1|DV491209
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|60352737|gb|DN219710.1|DN219710
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|91050822|gb|EB161240.1|EB161240
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|76016342|gb|DT943512.1|DT943512
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGTTCAGCCTCTTTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|148944556|gb|EC889680.2|EC889680
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTTTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|211322575|gb|FL457017.1|FL457017
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|76909356|gb|DV163346.1|DV163346
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|31355089|gb|CD439446.1|CD439446
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|5871782|gb|AW018253.1|AW018253
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|211275807|gb|FL433165.1|FL433165
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|31357015|gb|CD441372.1|CD441372
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|71763886|gb|DR961823.1|DR961823
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|71318465|gb|DR795998.1|DR795998
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|14701399|gb|BI233817.1|BI233817
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTC
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTC
EST: gi|211457760|gb|FL454143.1|FL454143
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
EST: gi|211490441|gb|FL382377.1|FL382377
EST:     TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAG                         GGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT
genomic: TGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 40 (upstream exon), 49 (downstream exon)
Score: 157

ATTCCTTTGACTGGCCCAAATTCAGTTGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCATGTG


Block sizes: 40 (upstream exon), 48 (downstream exon)
Score: 270

ATTCCTTTGACTGGCCCAAATTCAGTTGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCATGTG


Block sizes: 40 (upstream exon), 45 (downstream exon)
Score: 95

ATTCCTTTGACTGGCCCAAATTCAGTTGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCATGTG


Block sizes: 40 (upstream exon), 49 (downstream exon)
Score: 196

ATTCCTTTGACTGGCCCAAATTCAGTTGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaa ... tcgtgtttagGGGGCCATGAGCTCAGCCTCTCTACTGGAAATGCTGGTGGAAGACTGGCATGTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCCTTTGACTGGCCCAAATTCAGTTGTTGGGAGAGCATTTGTGGTTCATGAGCTTGAAGATGATTTGGGGAAAGgtgagcctaattctactcgcgttccacattttcttgctattcagtagtatgctgcccttttaactttgctcatcgtgtttag

- - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG