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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATTGGAAATGTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATGCATCTTGCAAATTGGCTGTGTGATAACTATCTGAAAGATTCACTGgtaatcaacattcctctttgttacttgctctttggtcaccctgcagtttaccaatagccaatctcttgtaatttttagctttgcaataactactttcagt...

Basic information

species Zea mays
transcript GRMZM2G106683_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106683_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g05240.1 (Oryza sativa), 5'ss of exon 6
TTCATTGGAAATGTTCATGGTGATGAGCCTGTTGGAAGAGAGGTTCTTATGCATCTTGCAAATTGGCTGTGTGATAACTATCTGAAAGATTCACTGgtaatcaacattc-ctctttgttacttgctctt-----tggtcaccctgcagtttaccaatagccaatctcttgtaattttta---gctttgcaataactactttcagt--------------------------------------------
|   |||| ||||| ||||||||||| ||||||||||| |||||||||||  | ||||||||||||||||||||||||||| |||| ||| |  |||||| ||| |||| | | ||||||  |||||||      | |     |   | | | | || |     | |     ||||  |   | ||| |   || |  |   | |                                            
TATGTTGGTAATGTCCATGGTGATGAACCTGTTGGAAGGGAGGTTCTTATAAAGCTTGCAAATTGGCTGTGTGATAACTATTTGAAGGATCCCTTGgtaagcaagattctcacattgttatctgctcttaaattcgatgtttgtctggctcaactatggttttacgcaatatatttccatctgttttactgaaattgatagaaatatatggtaagctcaaaaacttaccagttaaactaatatctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78111726|gb|DV530123.1|DV530123
EST:     TTATGCATCTTGCAAATTGGCTGTGTGATAACTATCTGAAAGATTCACTG                         GCAACTCTCATTGTTGAGAACATGCACCTTCATATACTTCCGACGATGAAC
genomic: TTATGCATCTTGCAAATTGGCTGTGTGATAACTATCTGAAAGATTCACTGgtaatcaaca ... atttttgtagGCAACTCTCATTGTTGAGAACATGCACCTTCATATACTTCCGACGATGAAC
EST: gi|50339316|gb|CO534442.1|CO534442
EST:     TTATGCATCTTGCAAATTGGCTGTGTGATAACTATCTGAAAGATTCACTG                         GCAACTCTCATTGTTGAGAACATGCACCTTCATATACTTCCGACGAT
genomic: TTATGCATCTTGCAAATTGGCTGTGTGATAACTATCTGAAAGATTCACTGgtaatcaaca ... atttttgtagGCAACTCTCATTGTTGAGAACATGCACCTTCATATACTTCCGACGAT