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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCTTTCGGCTTGCAATCTTGTAAATTATTTTGGAAAGATGGACCTTGGTGGCTCTGGCGTTGGTCAGATAGCAGTTTATCCTGTACTTGTAAAAAAGgtgcacagcttcagttacaaacaatatcttgatgttttatgcactgacttctttgctgttatttcag

Basic information

species Zea mays
transcript GRMZM2G106056_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os04g54340.1 (Oryza sativa), 5'ss of exon 6
TATTCTTTCGGCTTGCAATCTTGTAAATTATTTTGGAAAGATGGACCTTGGTGGCTCTGGCGTTGGTCAGATAGCAGTTTATCCTGTACTTGTAAAAAAGgtgcacagcttcagttacaaacaatatcttgatgttttatgcactgact-----tctttgctgttatttcag
|||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | |||||||| ||||||||||| ||||||||||||| |  |||||| | ||  ||| | | |||  | | |     | |       | ||| ||||||||||||
TATTCTCTCAGCCTGCAATCTTGTAAATTATTTTGGGAAGATGGACCTTGGTGGCTCTGGTGTTGGTGAAATAGCAGTCTATCCTGTACTCGTAAAAAAGgtgcgctacttcagctgcaggcaa-accatgaactctcacatgttaatcctctgtttttcctgttatttcag

upper sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 6
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 6
TATTCTTTCGGCTTGCAATCTTGTAAATTATTTTGGAAAGATGGACCTTGGTGGCTCTGGCGTTGGTCAGATAGCAGTTTATCCTGTACTTGTAAAAAAGgtgcacagcttcagttacaaacaatatcttgatgttttatgcactgacttctttg-ctgttatttcag---------------
||||||||| || ||||| ||||| || ||||||||||||||||  |||||||| ||||| ||||| |||||  |  | || ||| ||||| | || |||||          | || | |||     |     | |     | |||||||||| | || | |||| |                
TATTCTTTCCGCATGCAACCTTGTGAACTATTTTGGAAAGATGGTTCTTGGTGGTTCTGGTGTTGGCCAGATTACTCTCTACCCTATACTTATGAAGAAGgttggtgtaaagaatttctaacctagacacctggctcc---ccctgacttcttggactatcatttaatcaaattaatgtttag

upper sequence: GRMZM2G106056_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 5
TATTCTTTCGGCTTGCAATCTTGTAAATTATTTTGGAAAGATGGACCTTGGTGGCTCTGGCGTTGGTCAGATAGCAGTTTATCCTGTACTTGTAAAAAAGgtg---cacag--cttcagttacaaacaatat---cttgatgtt-------ttatgcactgacttctttgctgttatttcag
|||||||||||| |||||||| || || |||||||| || ||||  ||||| || ||||| |||||||| ||  |  | || ||| | ||| | |  ||||||   ||||   ||| | |   | |   | |   || | | ||       ||||    |||||| | |    || |  |||
TATTCTTTCGGCATGCAATCTGGTGAACTATTTTGGGAAAATGGTTCTTGGAGGTTCTGGTGTTGGTCAAATCACTCTCTACCCTATTCTTATTAGGAAGgtgtgtcacaatactttattcttagaaggtttgggctagttattaatttctttatagtatgacttatatttctttttggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91052429|gb|EB162847.1|EB162847
EST:     GTGGCTCTGGCGTTGGTCAGATAGCAGTTTATCCTGTACTTGTAAAAAAG                         GGCATGACTTCAGTTGCACTGTATGGTCTTGGAAACATTAGAGATGAACGA
genomic: GTGGCTCTGGCGTTGGTCAGATAGCAGTTTATCCTGTACTTGTAAAAAAGgtgcacagct ... gttatttcagGGCATGACTTCAGTTGCACTGTATGGTCTTGGAAACATTAGAGATGAACGA