1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAACAGCCTTGATAACCCAGCCGCAGGTGCGCCAGTAGAACAGCTAAATGAGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAAgtcctacactgcctcactcaatattttatttcgcactgttggttttgtcaatctggtctaagtctaaccactcagcctatcttatttgcag
species | Zea mays |
transcript | GRMZM2G104769_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAA GTACCTGACCATCTCTGTTGCAAAATCEST: gi|94476727|gb|EB705685.1|EB705685
genomic: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAAgtcctacact ... ttatttgcagGTACCTGACCATCTCTGTTGCAAAATC
EST: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAA GTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCGEST: gi|71303900|gb|DR788068.1|DR788068
genomic: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAAgtcctacact ... ttatttgcagGTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCG
EST: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAA GTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCGEST: gi|211291927|gb|FL366248.1|FL366248
genomic: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAAgtcctacact ... ttatttgcagGTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCG
EST: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAGAGACTGATACTCCAGCAGAA GTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCGEST: gi|149106376|gb|EE292096.2|EE292096
genomic: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAAgtcctacact ... ttatttgcagGTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCG
EST: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAA GTACCTGACCATCTCTGTTGCAAAATCACACTTGATEST: gi|149106375|gb|EE292095.2|EE292095
genomic: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAAgtcctacact ... ttatttgcagGTACCTGACCATCTCTGTTGCAAAATCACACTTGAT
EST: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAA GTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCGEST: gi|91054321|gb|EB164739.1|EB164739
genomic: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAAgtcctacact ... ttatttgcagGTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCG
EST: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAA GTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCGEST: gi|14244851|gb|BG842789.2|BG842789
genomic: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAAgtcctacact ... ttatttgcagGTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCG
EST: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAA GTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCG
genomic: AGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAAgtcctacact ... ttatttgcagGTACCTGACCATCTCTGTTGCAAAATCACACTTGATATCTTCAGAGACCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACAGCCTTGATAACCCAGCCGCAGGTGCGCCAGTAGAACAGCTAAATGAGCTCGAGGAAGTTTTCAAGAAGGCTGCAAAGACTGATACTCCAGCAGAAgtcctacactgcctcactcaatattttatttcgcactgttggttttgtcaatctggtctaagtctaaccactcagcctatcttatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG