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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttggggccatttacctatgacattcctcttgcaatataatggccatgggccatggctgttcagttagtggttcttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag

Basic information

species Zea mays
transcript GRMZM2G104730_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 5'ss of exon 5
GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttggggccatttacctatgacattcctcttgcaatata-atggccatgggccatggctgttcagttagtggttcttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag
|| || || || || || |||||||| ||||| |||||||||||| |||| ||||| ||||| ||| | |||||||| |||||||| |||||||| | ||||   |||| |  |   |||   |||| |||     |||  ||  ||||      ||| | | ||  |  |  | |  |  |   ||  || | |||  |||   || ||||                                    
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAGTTGACTGTCAATATTGTTGCTTTAGTCATCAATTTTGTCTCAGCATGCATCATAGgtg-agggcaacat---tatagtattcatctgatgctatgtatttccattaa--gtggttctcca--tgatc-tccaagacagtactaatgttttgc--tcttccgtcacag------------------------------------

upper sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g04460.1 (Oryza sativa), 5'ss of exon 5
GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttggggccatttacctatgacattcctcttgcaatata-atggccatgggccatggctgttcagttagtggttcttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag
|| || || || || || |||||||| ||||| |||||||||||  |||| ||||| ||||| ||| | || ||||| |||||||| |||||||| ||||||   |||| |  |   |||   |||| |||   |  ||  ||  ||||      ||| |   ||     || |       | |          | |  |||   || ||||                                    
GGTCGTGCAGTTTATATTAACATCCAAAAGTTTGTGCAGTTTCAATTGACTGTCAATATTGTTGCTTTAGTTATCAATTTTGTCTCAGCATGCATCACAGgtg-agggcaacat---tatagtattcatctgataccatgtatttccattaa--gtggttcccca-----tgatctccaacacagtactaatgtttctctcttccgtcacag------------------------------------

upper sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 5
GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttggggccatttacctatgacattcctcttgcaatataatggccatgggccatggctgttcagttagtggttcttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag
|| || ||  | ||||||||||| || || || |||||||||||| | || ||||| ||||| |||||| | || |||||||| || |||||||| |||||||||  |  ||| |      |||||    || || |  | ||     |   |       |||| | |        |  |  || | || |  |    || |                                             
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttg--attcat---aaacattttgtttccactgcagtgttgtcgaatc----tgtttcaatgaacaaccgat--ttcattttcttccttattttcag---------------------------------------------

upper sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G15800.1 (Glycine max), 5'ss of exon 5
GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttggggccatttacctatgacattcctcttgcaatataat-ggccatgggcca-tggctgttcagttagtggttcttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag
|| || ||  | ||||||||||| || || || |||||||||||| | || ||||| ||||| |||||| | || |||||||| || |||||||| |||||||||  |     ||   ||    || |   |||| | |  | |    ||   || ||      |  |||    |||||  | ||| | | |                                                         
GGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATATTGTTGCTCTGATTATTAACTTTGTTTCTGCATGCATCACAGgtttgttgattcataaaaattttgtttccactgcagtgttgttgaatctgtttcaatgaacagccgattaagttttcttcct-tattttcag---------------------------------------------------------

upper sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT2G41560.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttg---gggccatttacctatgac-attcctcttgcaatataatggccatgggccatggctgttcagttagtggttcttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag
|| || || || || |||||||| |||||||| || ||||| ||||| || || ||  | || |||||| |||||||||||||||| || ||||| ||||||  |   |    |   | | |  || ||   ||||  |   |  ||| ||       |  |  ||   ||  |||||  |  |  |                                                                
GGACGTGCTGTATATATAAACATTCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTGGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACAGgtacgacagaaaaaccaatcaaacaccatctttcttctagcgtt-tggtcaaatatagtaaccatttcttt--tggtttcttttccag---------------------------------------------------------------

upper sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 5'ss of exon 5
GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttggggccatttacctatgacattcctcttgcaatataatggccatgggccatggctgttcagttagtggtt-cttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag
|| || || || || || |||||||||||||| || ||||| ||||| || || ||  |||| |||||| |||||||||||||||| || ||||| || |||  |         ||  ||| ||    | |  |     ||||    | |   ||  | |||    || || ||  || | |  | | | |                                                         
GGACGTGCTGTGTATATCAACATCCAGAAGTTTGTTCAGTTCCAGCTAACTGTTAATGTTGTTGCTCTGATCATCAACTTTGTCTCTGCTTGCATCACTGgtaagtaaaatcaaacacatg-cacaattttcac----caatgatttttga--ataacagtttcagtaatgattgttttgcaccttttcag---------------------------------------------------------

upper sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv13s0158g00360.t01 (Vitis vinifera), 5'ss of exon 5
GGCCGCGCGGTCTACATAAACATCCAGAAGTTCGTGCAGTTTCAGCTGACCGTCAACATTGTGGCTCTGGTCATCAACTTTGTCTCGGCATGCATTACAGgtttggggccatttacctatgacattcctcttgcaatataatggccatgggccatggctgttcagttagtggttcttggtatatctgctgctatgccatctggagtaacagtgctttgagtgctgtactactgtactgctacgacag
|||||  | ||||||||||| || || || || |||||||| ||| | || ||||||||||| |||||  | ||||||||||| || ||||||||  ||||  || |  |||  |  ||   | ||   ||| |||  |||  |   |||     | || |  | | |      ||| | | || |  | | | |  || |  ||                                          
GGCCGGTCAGTCTACATAAATATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAACATTGTTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGg--tgcgttcatccat-taaatctttttccttacaacttaa--gatttgg----cgtctatataataaagatgacttagaa-atttctttccaagtaattttcag------------------------------------------