Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATTCTCAGGAACAAATCAATTATTCTATCCTCAGACTTGGGCCTTTGCAGTAATTGTAGCTACCTGTGTGAGCACCCAAATTAACTATCTGAATAAGgtaattgttctgtttcgttactctttttttttaagatttaaaaagtaaacaatttttctgaaacatgcaagtttcaccaccatgataagcatatgagctc...

Basic information

species Zea mays
transcript GRMZM2G104147_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G104147_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g09140.2 (Oryza sativa), 5'ss of exon 6
AACATTCTCAGGAACAAATCAATTATTCTATCCTCAGACTTGGGCCTTTGCAGTAATTGTAGCTACCTGTGTGAGCACCCAAATTAACTATCTGAATAAGgtaattgttctgtttcgttactctttttttttaagatttaaaaagtaaacaatttttctgaaacatgcaagttt----cacc-accatgataagcatatgagctc---
|||||||||||||   || || ||||||||||||||||| ||||| |||||  |||||||||| ||||||||||||||||| || |||||||| |||||||||  ||    | ||   ||   |   |||    ||| |        ||||  || ||| |  ||| ||| ||     ||||   | | | ||| || |   ||    
AACATTCTCAGGAGTGAACCAGTTATTCTATCCTCAGACATGGGCTTTTGCCCTAATTGTAGCCACCTGTGTGAGCACCCAGATAAACTATCTAAATAAGgtacatgaagagatt---taacttgagtttaagggatctt-----ctaacagcttgtctcattcatacaacttcatcgcacctgtccttaaaagaatcttcactagct