1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAGgtttgatcactttttccatcaaagttaatgactggtattcagtaggggctatttttatgatgtaataagtgcttttgtattgtgattttcatatgtgcat...
species | Zea mays |
transcript | GRMZM2G102475_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAG GCTGAGCAAAAGGTTCGTGAAGAAAGTGAAAGGCTGCGACAGCAGGAACGTEST: gi|148953283|gb|EE152769.2|EE152769
genomic: AGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAGgtttgatcac ... ttcgttttagGCTGAGCAAAAGGTTCGTGAAGAAAGTGAAAGGCTGCGACAGCAGGAACGT
EST: AGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAG GCTGAGCAAAAGGTTCGTGAAGAAAGTGAAAGGCTGCGACAGCAGGAACGTEST: gi|149026687|gb|EE046096.2|EE046096
genomic: AGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAGgtttgatcac ... ttcgttttagGCTGAGCAAAAGGTTCGTGAAGAAAGTGAAAGGCTGCGACAGCAGGAACGT
EST: AGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAG GCTGAGCAAAAGGTTCGTGAAGAAAGTGAAAGGCTGCGACAGCAGGAACGTEST: gi|93013768|gb|EB639288.1|EB639288
genomic: AGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAGgtttgatcac ... ttcgttttagGCTGAGCAAAAGGTTCGTGAAGAAAGTGAAAGGCTGCGACAGCAGGAACGT
EST: AGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAG GCTGAGCAAAAGGTTCGTGAAGAAAGTGAAAGGCTGCGACAGCAGGAACGTEST: gi|149045935|gb|EE047933.2|EE047933
genomic: AGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAGgtttgatcac ... ttcgttttagGCTGAGCAAAAGGTTCGTGAAGAAAGTGAAAGGCTGCGACAGCAGGAACGT
EST: AGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAG GCTGAGCAAAAGGTTCGTGAAGAAAGTGAAAGGCTGCGACAGCAGGAACGT
genomic: AGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAGgtttgatcac ... ttcgttttagGCTGAGCAAAAGGTTCGTGAAGAAAGTGAAAGGCTGCGACAGCAGGAACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATTTCAACAAGAGGATAAAAAGCTATCCAACTCTGAGGCTTTTCTGCGCAGATCAGAGACTCAGCGAAAGgtttgatcactttttccatcaaagttaatgactggtattcagtaggggctatttttatgatgtaataagtgcttttgtattgtgattttcatatgtgcat
- - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - AGATCA