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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTCAACTGGCATATGCTCCTGGAGGATATTGGCCTTTGGATACCAGATGAAGTCACACATACTGTACATGATGATAAACCTGAAAATGAACCAGAAGgtttgttcttatatggtcatgcaatgtgtttgtgctggtttatgatgtttagagcacttggtgtcaagttggatcctttgtgtacttttgaatcgcccgaagaaagatttgttttatgatttccaatgttctctactattgcag

Basic information

species Zea mays
transcript GRMZM2G101412_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G101412_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g52410.1 (Oryza sativa), 5'ss of exon 5
GAGTTCAACTGGCATATGCTCCTGGAGGATATTGGCCTTTGGATACCAGATGAAGTCACACATACTGTACATGATGATAAACCTGAAAATGAACCAGAAGgtttgttcttatatggtcatgcaatgtgtttgtgctggtttatgatgt---ttagagcacttggtgtcaagttggatcctttg--tgtacttttgaatcgc---ccgaaga----aagatttgttttatgatttccaatgt-tctctactattgcag
 |||||||||||||| |||| ||||| || ||||| ||||||||||||   |||||| |||| |||| ||||||||| |||||||| ||||||||||||||| | || || | || | ||  |    |||        || |||   |   ||  | || ||| ||||   ||      | |   |||| || |  |         ||||     || ||  | ||| |  |||||||  | | |  | | ||||||
CAGTTCAACTGGCATGTGCTGCTGGAAGACATTGGTCTTTGGATACCATCAGAAGTCTCACACACTGAACATGATGACAAACCTGAGAATGAACCAGAAGgtctcttttt-tgtgtttatttatgaagttcagagca-ttcatggcctcagttcaaacaattg-tgtcctttttacctttgtagttgtagttatagactatattttgaagttctcaaaatgagattt-tagtttccaacctatgttaattgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149070871|gb|EE159279.2|EE159279
EST:     TGAAGTCACACATACTGTACATGATGATAAACCTGAAAATGAACCAGAAG                         AAGAAGAGATAGTAGCAGGTCCACCCTTGTCC
genomic: TGAAGTCACACATACTGTACATGATGATAAACCTGAAAATGAACCAGAAGgtttgttctt ... actattgcagAAGAAGAGATAGTAGCAGGTCCACCCTTGTCC