1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATACCAAGTACAGAGATTGACAAATCAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctcttttttaataaatttttaccttgaatttagctgtttttttagcaatcttggtttcacaactatgctttctgttttgctaacag
species | Zea mays |
transcript | GRMZM2G100620_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|211471653|gb|FL177820.1|FL177820
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|149014483|gb|EE044106.2|EE044106
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|19272503|gb|BM888759.1|BM888759
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|149111001|gb|EE294500.2|EE294500
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|91056062|gb|EB166480.1|EB166480
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|76292130|gb|DV031698.1|DV031698
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAACTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|148944813|gb|EC889958.2|EC889958
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|78092801|gb|DV521175.1|DV521175
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|78077143|gb|DV505577.1|DV505577
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|148937013|gb|EC881184.2|EC881184
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|71439882|gb|DR820932.1|DR820932
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|149111002|gb|EE294501.2|EE294501
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|18654690|gb|BM499495.1|BM499495
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|50330974|gb|CO526100.1|CO526100
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|78113433|gb|DV531825.1|DV531825
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|6564142|gb|AW231764.1|AW231764
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGC-AGAAGGTAGTAAACCACCACCAEST: gi|149081122|gb|EE170228.2|EE170228
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|19351666|gb|BM896198.1|BM896198
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|19351243|gb|BM895775.1|BM895775
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCAEST: gi|211028537|gb|FL445303.1|FL445303
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
EST: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTG CTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
genomic: CAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctc ... ttgctaacagCTGCAATTGTACTTCAAGCCAAGGCCGCCAGAAGGTAGTAAACCACCACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACCAAGTACAGAGATTGACAAATCAGCGAGCAAATTCTTCTCTTACTGGGATCCTGACAAGAAGGAATACCTGgtgagttctcttttttaataaatttttaccttgaatttagctgtttttttagcaatcttggtttcacaactatgctttctgttttgctaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA