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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaatggcctccaaacatctctgtgtatacatacgtacgtaccttgatgttgagttgtttacacgcatacgtttcttagttcttactgtactctc...

Basic information

species Zea mays
transcript GRMZM2G099522_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91875363|gb|EB405320.1|EB405320
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
EST: gi|32857754|gb|CD997435.1|CD997435
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
EST: gi|32846169|gb|CD985850.1|CD985850
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
EST: gi|211157483|gb|FL345406.1|FL345406
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
EST: gi|31360882|gb|CD445239.1|CD445239
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGNGAGGAAGGT
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
EST: gi|7145381|gb|AW506862.1|AW506862
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
EST: gi|32848261|gb|CD987942.1|CD987942
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAGCAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
EST: gi|32836291|gb|CD975969.1|CD975969
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGA
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGA
EST: gi|32846341|gb|CD986022.1|CD986022
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
EST: gi|7145380|gb|AW506861.1|AW506861
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
EST: gi|32848303|gb|CD987984.1|CD987984
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
EST: gi|89761505|gb|DY689494.1|DY689494
EST:     GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAG                         CTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT
genomic: GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaat ... caagtggcagCTGCAAGAAACAAGGCCAGAGAACGCGCTCCGTGTCTCCTGGGAGGAAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACAAGAATTGCTGGATCTCAATAAAGACCTAAGGAAGCAGgtaatgcaatggcctccaaacatctctgtgtatacatacgtacgtaccttgatgttgagttgtttacacgcatacgtttcttagttcttactgtactctc

- - - - -  GCTGGA
- - - - - - - - - - - - - - - - AAGGAA