1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGAAAGAAGTTACTCACGCTCCCCATCTCCACGCCGTGGAAGAGGTCGCAGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgttttttccttgagcagttggctatttttttccttgagcagttgagctcgttttgatatttcctttttattatcctcag
species | Zea mays |
transcript | GRMZM2G099317_T04 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCCGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|71298910|gb|DR785450.1|DR785450
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|148954856|gb|EC900331.2|EC900331
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGGCGCCGTGACCGTGAEST: gi|60343292|gb|DN210265.1|DN210265
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: CAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|60351707|gb|DN218680.1|DN218680
genomic: CAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|31406033|gb|CD484765.1|CD484765
genomic: AGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: GGAGCCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGAEST: gi|211004444|gb|FL448785.1|FL448785
genomic: GGAGCCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
EST: CCGGAGCTATAG CCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
genomic: CCGGAGCTATAGgtatgatgtt ... ttatcctcagCCGATCGAGGTCCCTATCTGGATCTCCTAGGGGAGGCCGCCGTGACCGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAAGAAGTTACTCACGCTCCCCATCTCCACGCCGTGGAAGAGGTCGCAGTCCAAGCTATAGCAGGAGCAGGAGCCGGAGCCGGAGCCGGAGCTATAGgtatgatgttttttccttgagcagttggctatttttttccttgagcagttgagctcgttttgatatttcctttttattatcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT