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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGTTTTACTGGCATTGGTGTTGGTGCAGCTTATCATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagattttgatattggtaacaaatttaaagttttttacttgcctttcttaacgtatatccctggacgtctgagtgtactataatggtccctgcttgct...

Basic information

species Zea mays
transcript GRMZM2G097226_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097226_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g33500.1 (Oryza sativa), 5'ss of exon 6
GCTGGTTTTACTGGCATTGGTGTTGGTGCAGCTTATCATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcag--attttgatattggtaacaaatttaaagttttttacttgcctttcttaacgtatatccctggacgtctgagtgtactataatggtccctgcttgct--
||||| ||||||||||||| |||||||||||| ||||| |||||||| ||| || ||||||| |||||||| |||||||| ||||||||  |  ||      |||   || |   |   | | |  || | |  |   || |  |   | | || |     |  | | || |     |   |  | | |  
GCTGGGTTTACTGGCATTGCTGTTGGTGCAGCGTATCAAGGTCTTCGACCTGTTGTAGAGTTCATGACATTCAATTTCTCAATGCAGgttggtaatgcacgaattatcaatatgct---actatgatagtggaatcagtttatattgttgcttgcagcaacggat-tgctgttgaattttatattagtttt

upper sequence: GRMZM2G097226_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA14G36540.3 (Glycine max), 5'ss of exon 6
GCTGGTTTTACTGGCATTGGTGTTGGTGCAGCTTATCATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagattttgatattggtaacaaatttaaagttttttactt-gcctttcttaacgtatat-ccctggacgtctgagtgtactataatggtccctgcttgct
||||| ||| |||| ||||| ||||| || |||||  |||||||  ||||| || | ||||||||||| ||||| ||||| ||||||||  || ||| || ||| |  ||   ||    | ||  | |  |  |   ||||   ||||    |  ||  | |     |||  | |  |   |   | | 
GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt-atcttgattgcatcctttctttcttaaattgagtgtgagttaaatgatatattttttacagcagcac-cacttaatttatgtatatgtaca

upper sequence: GRMZM2G097226_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 6
GCTGGTTTTACTGGCATTGGTGTTGGTGCAGCTTATCATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagattttgatattggtaacaaatttaaagttttttacttgccttt---cttaacgtatat-ccctggacgtctgagtgtactataatggtccctgcttgct
||||| ||| |||| ||||| |||||||| |||||  |||||||  ||||| || | ||||||||||| ||||| ||||| ||||||||  || ||| || ||| |  ||   ||    || || | |||  | |   ||| |   ||||    |  ||  | | ||  |||  | |  |   |   | | 
GCTGGGTTTGCTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAGgttggagttt-atcttgattgcatcctttct-ttcttaaattgagtgtgaacttgagtgatatattttttacagcagcgt-cacttaatttatgtatatgtac-

upper sequence: GRMZM2G097226_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv01s0146g00310.t01 (Vitis vinifera), 5'ss of exon 7
GCTGGTTTTACTGGCATTGGTGTTGGTGCAGCTTATCATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagattttgatattggtaa---caaatt-taaagttttttacttgcctttcttaacgtatatccctggacgtctgagtgtactataat-ggtccctgcttgct
|||||||||||||| ||||| |||||||| |||||  ||||||||  |||| || ||||||| ||||||||||||||||| |||||||| ||| | | ||     ||    |||||| | ||  ||| || || |   | |||    || | |    |        |   ||   || ||||    ||    
GCTGGTTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTTAAGCCTGTTGTAGAGTTCATGACATTTAATTTCTCTATGCAGgttagagtcttatcactatatactcaaattatgaaaatttctagtt-ctgattttatttgatgttctcaaattgaacctttagctgggattggtcaaaact----

upper sequence: GRMZM2G097226_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv17s0000g00690.t01 (Vitis vinifera), 5'ss of exon 6
GCTGGTTTTACTGGCATTGGTGTTGGTGCAGCTTATCATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagattt-tgatattggtaacaaat-ttaaagttttttacttgcctttcttaacgtatatccctggacgtctgagtgtactataatggtccctgcttgct
|| || ||| | || ||||| |||||||| ||||| |||||||||  |||||| ||||| ||||||||||||||||||||  ||||||||||| ||    | ||   ||    | ||  | ||   |  |   | |   | | || | ||    |   |       ||| |      | ||||  |   
GCGGGCTTTGCCGGAATTGGAGTTGGTGCTGCTTACCATGGTCTTAAGCCTATCATAGAATTTATGACATTTAATTTCTCCTTGCAGgtcagagttactttcttaaaaattggtctttgaattgagtcttaatcatgtcttaggtctctcttgtggtattaccagttaccacctctattcctgtatc--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78122124|gb|DV540508.1|DV540508
EST:     ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAG                         GCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
genomic: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagatttt ... gtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
EST: gi|211069303|gb|FL193602.1|FL193602
EST:     ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAG                         GCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAACTATATGTCAGCT
genomic: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagatttt ... gtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
EST: gi|32940983|gb|CF045802.1|CF045802
EST:     ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAG                         GCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
genomic: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagatttt ... gtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
EST: gi|211088145|gb|FL307530.1|FL307530
EST:     ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAG                         GCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
genomic: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagatttt ... gtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
EST: gi|91057168|gb|EB167586.1|EB167586
EST:     ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAG                         GCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT
genomic: ATGGTCTTCGGCCTATTATAGAGTTTATGACATTTAATTTCTCGATGCAGgtcagatttt ... gtatcttcagGCTATTGATCATATCATCAATTCAGCTGCCAAGTCAAATTATATGTCAGCT