1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTTAAGTTCCAAAGGGTCTACGATCCTGCTACAGAAGATATTATTCATTTGTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTTAGGCCCATatcctttgctgagcttatgtttagatgttaaagctctttcatatgaggttatccactgttctagatgatgtgaagctgtttcctgaatttattaggctgc...
species | Zea mays |
transcript | GRMZM2G096920_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTTAGGCCCAT GGTTACCACAGAATATTGCCAAAGGCATTGCTCTAGGGAACATTGATCCACEST: gi|19351652|gb|BM896184.1|BM896184
genomic: GTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTTAGGCCCATatcctttgct ... ttttttacatGGTTACCACAGAATATTGCCAAAGGCATTGCTCTAGGGAACATTGATCCAC
EST: GTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTTAGGCCCAT GGTTACCACAGAATATTGCCAAAGGCATTGCTCTAGGGAACATTGATCCACEST: gi|32934732|gb|CF039544.1|CF039544
genomic: GTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTTAGGCCCATatcctttgct ... ttttttacatGGTTACCACAGAATATTGCCAAAGGCATTGCTCTAGGGAACATTGATCCAC
EST: GTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTTAGGCCCAT GGTTACCACAGAATATTGCCAAAGGCATTGCTCTAGGGAACATTGATCCACEST: gi|19272491|gb|BM888747.1|BM888747
genomic: GTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTTAGGCCCATatcctttgct ... ttttttacatGGTTACCACAGAATATTGCCAAAGGCATTGCTCTAGGGAACATTGATCCAC
EST: GTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTTAGGCCCAT GGTTACCACAGAATATTGCCAAAGGCATTGCTCTAGGGAACATTGATCCACEST: gi|31354162|gb|CD438519.1|CD438519
genomic: GTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTTAGGCCCATatcctttgct ... ttttttacatGGTTACCACAGAATATTGCCAAAGGCATTGCTCTAGGGAACATTGATCCAC
EST: GTCAAGTGTGCCTCANAGCCTCATTGAAGATTTGGAATTTTTAGGCCCAT GGTTACCACAGAATATTGCCAAAGGCATTGCTCTAGGGAACATTGATCCAC
genomic: GTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTTAGGCCCATatcctttgct ... ttttttacatGGTTACCACAGAATATTGCCAAAGGCATTGCTCTAGGGAACATTGATCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAAGTTCCAAAGGGTCTACGATCCTGCTACAGAAGATATTATTCATTTGTCAAGTGTGCCTCAAAGCCTCATTGAAGATTTGGAATTTTTAGGCCCATatcctttgctgagcttatgtttagatgttaaagctctttcatatgaggttatccactgttctagatgatgtgaagctgtttcctgaatttattaggctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA