1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGATTTGGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAGgttcataccccactattttggtttcctaaactgataggcacaactagaaattatcgagtgatgtctaactttcctacctgtcttgcaatgcag
species | Zea mays |
transcript | GRMZM2G096647_T08 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAG AGTTTGGTTTATGGGGCTAAGGTAGAGGCTGCCATCGCCATTGGATTCAATEST: gi|76927628|gb|DV171311.1|DV171311
genomic: GGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAGgttcataccc ... tgcaatgcagAGTCTGGTTTATGGGGCTAAGGTAGAGGCTGCCATCGCCATTGGATTCAAT
EST: GGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAG AGTCTGGTTTATGGGGTTAAGGTAGAGGCTGCCATCGCCATTGGATTCAATEST: gi|50338073|gb|CO533199.1|CO533199
genomic: GGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAGgttcataccc ... tgcaatgcagAGTCTGGTTTATGGGGCTAAGGTAGAGGCTGCCATCGCCATTGGATTCAAT
EST: GGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAG AGTCTGGTTTATGGGGCTAAGGTAGAGGCTGCCATCGCCATTGGATTCAATEST: gi|60358154|gb|DN225127.1|DN225127
genomic: GGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAGgttcataccc ... tgcaatgcagAGTCTGGTTTATGGGGCTAAGGTAGAGGCTGCCATCGCCATTGGATTCAAT
EST: GGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAG AGTCTGGTTTATGGGGCTAAGGTAGAGGCTGCCATCGCCATTGGATTCAATEST: gi|71761078|gb|DR959015.1|DR959015
genomic: GGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAGgttcataccc ... tgcaatgcagAGTCTGGTTTATGGGGCTAAGGTAGAGGCTGCCATCGCCATTGGATTCAAT
EST: GGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAG AGTCTGGTTTATGGGGCTAAGGTAGAGGCTGCCATCGCCATTGGATTCAAT
genomic: GGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAGgttcataccc ... tgcaatgcagAGTCTGGTTTATGGGGCTAAGGTAGAGGCTGCCATCGCCATTGGATTCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATTTGGATGATGTTGGAGATGTGCTTTGGTGTAGTTCATCTCTCCCGAATCAAGgttcataccccactattttggtttcctaaactgataggcacaactagaaattatcgagtgatgtctaactttcctacctgtcttgcaatgcag
- - - - - - - TTGGAG
- - - - - - - TGGAGA
- - - - - - - - GGAGAT
- - - - - - - - GAGATG