1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatgattattttgtttccaagcaggcaaaaaatgttgtaactattattttcttcttgtaacctattgataaattgctagggacagtaattcagc...
species | Zea mays |
transcript | GRMZM2G095969_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATNAAGGCAAG GTCGTTGCCGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|101392457|gb|EB818158.1|EB818158
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|88757501|gb|DY541642.1|DY541642
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|76936926|gb|DV174965.1|DV174965
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211481566|gb|FL145739.1|FL145739
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCCGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|78179334|gb|DV549707.1|DV549707
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211484447|gb|FL145748.1|FL145748
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|7009462|gb|AW455727.1|AW455727
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: GCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211487326|gb|FL145759.1|FL145759
genomic: GCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211487336|gb|FL145769.1|FL145769
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211487327|gb|FL145760.1|FL145760
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCCGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|94477631|gb|EB706589.1|EB706589
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211484456|gb|FL145757.1|FL145757
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCCGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211487328|gb|FL145761.1|FL145761
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCCGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|71774366|gb|DR972244.1|DR972244
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|76021692|gb|DT948862.1|DT948862
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|74242558|gb|DT650472.1|DT650472
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|71434563|gb|DR815613.1|DR815613
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211487335|gb|FL145768.1|FL145768
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCCGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211484453|gb|FL145754.1|FL145754
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCCGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211481559|gb|FL145732.1|FL145732
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCCGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211484445|gb|FL145746.1|FL145746
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGSACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCSGTTGGTGAATGTGGTTTGGATEST: gi|89251475|gb|DY623261.1|DY623261
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGAT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGATTTCAGTTCTGTEST: gi|211481563|gb|FL145736.1|FL145736
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAC GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211484450|gb|FL145751.1|FL145751
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|78108903|gb|DV527320.1|DV527320
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|37421738|gb|CF648570.1|CF648570
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211484449|gb|FL145750.1|FL145750
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTTGEST: gi|211487330|gb|FL145763.1|FL145763
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCT-G
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATNAAGGCAAG GTCGTTGCCGNTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGEST: gi|211481565|gb|FL145738.1|FL145738
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTG-TTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTG
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211481570|gb|FL145743.1|FL145743
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCCGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|71325561|gb|DR799471.1|DR799471
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211481561|gb|FL145734.1|FL145734
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCCGTTGGTTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGEST: gi|211487331|gb|FL145764.1|FL145764
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGT-GAATGTGGTTTGGATTATGACAGACTTCAGTTCTG
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCCGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|211484443|gb|FL145744.1|FL145744
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCCGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGTEST: gi|87157799|gb|DY402588.1|DY402588
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
EST: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAG GTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
genomic: ATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatg ... agttttgcagGTCGTTGCTGTTGGTGAATGTGGTTTGGATTATGACAGACTTCAGTTCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTCGAGGAGAGTGGAGATCCCGAGGGTCATTTTCAGGCACTGCTGGCTCTAGCGAAGGAGGGTTTAGATAAAGGCAAGgttgtgtatgattattttgtttccaagcaggcaaaaaatgttgtaactattattttcttcttgtaacctattgataaattgctagggacagtaattcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG