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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccaacttactttcctttttgttcaatttcgtttctcatatacttctgactaagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctag

Basic information

species Zea mays
transcript GRMZM2G095757_T02
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 6
AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccaacttactt-tcctttttgttcaatttcgtttctcatatacttctgactaagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctag---
|||| |||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||   || ||||||||||||| ||| |||||||||||| ||||  |||  | || |  ||    |  |||      | | ||  | | |||||||||||||||||||||||||| ||| |||||   
AATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTATgtatga---ctccattcaccaacttgcttctcctttttgttctatttgatttaccttaaaactccagttctgcaa-----agtcttggagatgcttcaagttactgatttgaatataggtttctctaggag

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 6
AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccaacttactt-tcctttttgttcaatttcgtttctcatatacttctgactaagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctag---
|||| |||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||   || ||||||||||||| ||| |||||||||||| ||||  |||  | || |  ||    |  |||      | | ||  | | |||||||||||||||||||||||||| ||| |||||   
AATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTATgtatga---ctccattcaccaacttgcttctcctttttgttctatttgatttaccttaaaactccagttctgcaa-----agtcttggagatgcttcaagttactgatttgaatataggtttctctaggag

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 9
AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccaacttactttcctttttgttcaatttcgt--ttctcatatacttctgactaagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctag
|| | || || |||||||||||  |||| ||||| |||||| | |||||  | ||   |||||||||||| ||||||||||||||||   ||| ||||| ||| ||  ||  |  || |||  |       || |  | | |||| |  | | ||   |||  |||  || | |      | |  |   ||     |  | |||     
AACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgat---ttctttcac-aacctatgtttttgcttattctctcctaaaattattttgttcttc-gctttatcatatttggatat--aacatg----gggctgatatattatgcttcatctttcag--

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 7
AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccaacttactttcctttttgttcaatttcgtttctcatatacttctga-ctaagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctag
|| | || ||||||||||||||  |||| ||||| |||||| | |||||  | ||   |||||||||||| ||||||||||||||||   ||| ||||| |     | ||  ||||||   |  |||  | || | ||| || ||  ||  ||  | |    | |  ||    | |   | |  |   ||   | |  |||||     
AACTTCCAGAAAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTATgtatgat---ttctttcacaa-----cctttgtttttgccta--ttctctcctaaaatagttttgttctttgctttatcatatttggaaataacatggggcttatatattatgtttcatttttcag--

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv17s0000g03010.t01 (Vitis vinifera), 5'ss of exon 6
AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcacca---acttactttcctttttgttcaatttcgtttctcata-tacttctgactaagcagtcttgactattcaatacgcttca---agttactgatttgaa-----tatagttttttctag
|| | ||||||||||| |||||| | ||||| ||||| ||||| || ||  ||||    ||||||||||| ||||||||||||||||| ||| ||||||     ||| |||||  ||| |   || || |  |  | ||   |  ||| |  |  |||| || | ||    |  ||  | |    |||  ||||||        | |  |||||| |||
AACTTCCTGAAAGATCATATGGATCAGATTGCCGCATTTATGTGCCAGAGAATCCCTCGAGCAGGTTTAAGAATGTTTATgtatgatgtctttattcacagttcactcactttaatttctacacatttactctgtttatggcatatctaa--actcagttttaaataccacaggcgtctaacttggtttttgattttttgtttttttgtttttttttag

upper sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 6
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccaacttactttcctttttgttcaatttcgtttctcatatacttctgac-taagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctag
|| | ||||||||||| |||||  ||||||| ||||| ||||| |||||  ||||||  ||||||||||| ||||||||||||||||   |      | | | | |||| |    |||||    |  ||| | |   |  | ||||| ||        |||   |   |  |     |   | |||||||   |   ||| |||||||
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgat--ttctcacaatccattcactt-caaaattgtttgtgtatgttccac---tgttcctgacatacatcaatatgatattgggaggca----agacttctgatttt--ttctgttgtttctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211278210|gb|FL461478.1|FL461478
EST:     GTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTAT                         GAGATCATTTTTGATGAATTTGTTATAGCTCATATCCTTGGATGGTGGCGT
genomic: GTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgac ... ttttttctagGAGATCATTTTTGATGAATTTGTTATAGCTCATATCCTTGGATGGTGGGGT