Sequence
atgc intronic sequence ATGC exonic sequenceTAAGTGTTTGTCGAAGGGAGCAGTTGATTTCTTGGTAAAACCACTACGTAAGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGTgtaagctgtttgtttttggtctagttttttctggatattttattccacgaaacatgaggcgtgatttctttgagtcctcactgtgtttcctttgtgatcactctgagttgaatttgcctctttggtactcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g17570.5 (Oryza sativa), 5'ss of exon 6
TAAGTGTTTGTCGAAGGGAGCAGTTGATTTCTTGGTAAAACCACTACGTAAGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGTgtaagct-gtttgtttt---tggtctagttttttctggatattttat---------tccacgaaacatgaggcgtgatttctttgagtcctcact----gtgtttcctttgtgatcactctgagttgaatttgcctctttggtactcag
|||||||||||| || ||||||||||| || | || || || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | |||| |||| ||| ||| ||| | || | ||| | ||| | | | | | | | || | | ||| | ||||| | ||||| | |||||| || |||| | ||||
TAAGTGTTTGTCAAAAGGAGCAGTTGACTTTCTAGTGAAGCCTATACGTAAGAATGAACTTAAGAACCTTTGGCAGCATGTTTGGAGACGATGCCACAGTgtaagtttgtttttttttgttggcctacctttaatgtgggatcaagtccccaactctccgtgtaactcatagtattttgattctaacttctttgtctgaatattttttatgtgactaatctgaatataatttgtctatttgtaattcag
upper sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA12G07860.1 (Glycine max), 5'ss of exon 3
TAAGTGTTTGTCGAAGGGAGCAGTTGATTTCTTGGTAAAACCACTACGTAAGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGTgtaagctgtttgtttttggtctagttttttctggatattttattccacgaaacatgaggcgtgatttctttgagtcc-tcactgtgtttcctttgtgatcactctgagttgaatttgcctctttggtactcag
|||||||||||| || || ||||||||||| || || ||||| | || | |||||| ||||| ||||| |||||||| |||||||| ||||||||||||| || || || | | ||| | | || | | || || | | | ||| | ||| ||||| |||| | | | |
TAAGTGTTTGTCAAAAGGTGCAGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTgtgagttgatt--------tacattttgtctcaggcatgtactgaaacaaattacagtgttttttttatcaaagtgaatcacttcatttcttccacttgaaaagtaaa-------------------------
upper sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA10G05520.1 (Glycine max), 5'ss of exon 3
TAAGTGTTTGTCGAAGGGAGCAGTTGATTTCTTGGTAAAACCACTACGTAAGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGTgtaagctgtttgtttttggtctagttttttctggatattttattccacgaaacatgaggcgtgatttctttgagtcctcactgtgtttcctttgtgatcactctgagttgaatttgcctctttggtactcag
|||||||||||| ||||| || ||||| || | || ||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||| | || ||| | | | || ||| || | || | || | | ||| | | | | | || | |
TAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTgtaagctgacttgaatttttctt-tcctgacattgtactttctttttccttttctggccaataatatgtatgacaatataacttataagcagtttgttgcc-------------------------------
upper sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA13G19870.3 (Glycine max), 5'ss of exon 1
TAAGTGTTTGTCGAAGGGAGCAGTTGATTTCTTGGTAAAACCACTACGTAAGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGTgtaagctgtttgtttttggtctagttttttctggatattttattccacgaaacatgaggcgtgatttctttgagtcctcactgtgtttcctttgtgatcactctgagttgaatttgcctctttggtactcag
|||||||||||| ||||| || ||||| || | || ||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||| || | | || |||| || ||| || | | ||| |||| | | | | ||| || ||| | | | || |
TAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTgtaagctg----acttgaattt--ttctttcctgacattatactt--------------tctaattccttttctggccaataacatgtatgatgttataacttacaagc-agtctgttgcc-----------
upper sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 6
lower sequence: AT5G02810.1 (Arabidopsis thaliana), 5'ss of exon 4
TAAGTGTTTGTCGAAGGGAGCAGTTGATTTCTTGGTAAAACCACTACGTAAGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGTgtaagc---tgtttgtttttggtctagtt------ttttctggatattttattccacg----aaacatgagg--cgtgatttctttgagtcctcactgtgtttcctttgtgatcactctgagttgaatttgcctctttggta-ctcag-----------------------
|||||| || ||||| ||||| ||||| || | || || ||| || | || ||||||||||||| ||||||||||||||||||||| ||||||| |||||| | || | | | || | | | | | | | | | | | | |||| || | || | | ||| | | | | ||| | || ||| | | || | || |||||| ||||
TAAGTGCTTATCGAAAGGAGCTGTTGACTTTCTTGTTAAGCCAATAAGAAAAAATGAGCTTAAGATCCTTTGGCAGCATGTTTGGAGAAGATGCCAAAGTgtatgtccttgctcatatatgattaatctgaaaacctgttggtacaactggtgataagtagtaaactagaaattcatggtctaattgtggattggtatcttctttttttttttccacatgattggtatcttactttttggtttctcatggttttccttgtttcttgttcag
upper sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv06s0004g03650.t01 (Vitis vinifera), 5'ss of exon 3
TAAGTGTTTGTCGAAGGGAGCAGTTGATTTCTTGGTAAAACCACTACGTAAGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGTgtaagctgtttgtttttggtctagttttttctggatattttattccacgaaacatgaggcgtgatttctttgagtcctcactgtgtttcctttgtg-atcactctgagttgaatttgcctctttggtactcag
||||||| |||| ||||| ||||||||||| ||||| ||||| | || |||||||| ||||| ||||||||||||||||||||||| ||||||||||||| || || | || ||| | | || ||| || | || | | | || || | | || | || | | | ||
TAAGTGTCTGTCCAAGGGTGCAGTTGATTTTTTGGTGAAACCTATTCGAAAGAATGAACTTAAAAACCTTTGGCAGCATGTTTGGAGAAGATGCCACAGTgtgagttgctatacctt-------tttgcttcaggcatgaaattacatgtccaatcatggacactcactccatgttaataataatattagctgatgcactagtttgg--------------------------
upper sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 6
lower sequence: Vv13s0067g03390.t01 (Vitis vinifera), 5'ss of exon 3
TAAGTGTTTGTCGAAGGGAGCAGTTGATTTCTTGGTAAAACCACTACGTAAGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGTgtaagctgttt-----gtttttggtctagttttttctggatattttattccacgaaacatgaggcgtgatttctttgagtcctcactgtgtttcctttgtgatcactctgagttgaatttgcctctttggtactcag
||| |||||||| ||||| |||||||| || || || || || | || || ||||||||||| ||||||||||||||||| |||||| || |||||| || || || | | |||| | | ||| || | | || | || | | | | | || | ||||
TAAATGTTTGTCAAAGGGTGCAGTTGACTTTTTTGTGAAGCCTATTCGAAAAAATGAGCTTAAAAACCTTTGGCAGCATGTGTGGAGGAAATTCCACAGGgtgagttgctatagtgactcccaaactagaatcaatttcatacttcgaactccaggtcagtttggtacatgcatataaattttaacaggaacaaacttgt-------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32840867|gb|CD980548.1|CD980548EST: AGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGT TCCAGTGGAAGTGAAAGTGGCATCCAGACACAGAAGTGTGCCAAACTAAAT
genomic: AGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGTgtaagctgtt ... tggtactcagTCCAGTGGAAGTGAAAGTGGCATCCAGACACAGAAGTGTGCCAAACTAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAAGTGTTTGTCGAAGGGAGCAGTTGATTTCTTGGTAAAACCACTACGTAAGAATGAGCTTAAGAACCTTTGGCAGCATGTTTGGAGGCGATGCCACAGTgtaagctgtttgtttttggtctagttttttctggatattttattccacgaaacatgaggcgtgatttctttgagtcctcactgtgtttcctttgtgatcactctgagttgaatttgcctctttggtactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG