1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGCAATATTGGCCACCTAGTGATTTTGATCACTTACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAGgtacgccttgaggcaaataaagctaatttcaaatgtgaaattactatgccacattgagttggtgcatttagttaaaccttcatatgccagtgttgtgttg...
species | Zea mays |
transcript | GRMZM2G095239_T03 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAG GTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGAEST: gi|74242103|gb|DT650017.1|DT650017
genomic: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAGgtacgccttg ... gagattgcagGTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGA
EST: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAG GTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGAEST: gi|60397176|gb|DN229992.1|DN229992
genomic: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAGgtacgccttg ... gagattgcagGTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGA
EST: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAG GTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGAEST: gi|60359172|gb|DN226145.1|DN226145
genomic: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAGgtacgccttg ... gagattgcagGTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGA
EST: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAG GTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGA
genomic: TACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAGgtacgccttg ... gagattgcagGTGAACCGGAAGTACAGAATAGCACCTAGTTCACCCAATTCAGAGCGCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAATATTGGCCACCTAGTGATTTTGATCACTTACTATCTGCAAAACTGAAGGACTTGTCCACCAGTGGCAAATTGATAAAGgtacgccttgaggcaaataaagctaatttcaaatgtgaaattactatgccacattgagttggtgcatttagttaaaccttcatatgccagtgttgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - CTGAAG