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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCAAGCTGTCATGTCGTTTGTCCCGGTGGACAAGATTGCCGTTCATTTCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaagcaacggtatgtttcgtcattggtctacgacattcatagagatatgcctaacacacacagacacacacatacacattcattgtctcgtcag

Basic information

species Zea mays
transcript GRMZM2G095141_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095141_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os12g04020.1 (Oryza sativa), 5'ss of exon 8
GCTTCAAGCTGTCATGTCGTTTGTCCCGGTGGACAAGATTGCCGTTCATTTCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaagcaacggtatgtttcgtcattggtctacgacattcatagagata-tgcctaacacacacagacacacacatacacattc-attgtctcgtcag------------------
|||| ||||||| ||||| ||||| || ||||||||||| ||||| |||||||| || || ||||| || |||||||||||||| || ||||| || |||||||||||    ||   |  |   | || ||  | | || |   |      || ||   |||| ||||||| |||  || | |   ||  |||      ||                   
GCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGATCGCCGTCCATTTCCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaaccacacttcacatcctgccaatg-ccaatga-acaaaccatcttactgaaaaacagacacaga-acaaccagaaatgctctgttggtctaacatttccttttgtattaccag

upper sequence: GRMZM2G095141_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os11g04210.1 (Oryza sativa), 5'ss of exon 8
GCTTCAAGCTGTCATGTCGTTTGTCCCGGTGGACAAGATTGCCGTTCATTTCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaagcaacggtatgtttcgtcattggtctacgacattcatagagata-tgcctaacacacacaga-cacacacatacacattcattgtctcgtcag------------------
|||| ||||||| ||||| ||||| || ||||||||| | ||||| ||||| || || || ||||| || |||||||||||||| || ||||| || |||||||||||    ||   |  |   | || ||  | | || |   |      || ||   |||| ||||| | ||  || | |  |  |  ||| |    ||                   
GCTTGAAGCTGTAATGTCTTTTGTTCCAGTGGACAAGCTCGCCGTCCATTTTCATGACACATACGGCCAAGCCCTTGCCAACATACTGGTCTCTCTCCAAgtaagcaaccacacttcacatcctgccaatg-ccaatga-acaaaccatcttactgaaaaacagacacaaaacaatcagaaatgctctgcttggcctaacatttccttttgtattaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5761976|gb|AI967024.1|AI967024
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|211227159|gb|FL464265.1|FL464265
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|71301050|gb|DR786554.1|DR786554
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|211088485|gb|FL432076.1|FL432076
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|149072591|gb|EE157105.2|EE157105
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|91872712|gb|EB402669.1|EB402669
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|110950579|gb|EE170731.1|EE170731
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|76016845|gb|DT944015.1|DT944015
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|31911304|gb|CD651858.1|CD651858
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|71318555|gb|DR796038.1|DR796038
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|211013342|gb|FL464501.1|FL464501
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|211139185|gb|FL464627.1|FL464627
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|30306657|gb|CD001330.1|CD001330
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|148950048|gb|EC895580.2|EC895580
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|211184211|gb|FL472379.1|FL472379
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|211081279|gb|FL464186.1|FL464186
EST:     TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTGTCGGGCCTTGGAGGCTGCCCG
EST: gi|161587654|gb|EY960381.1|EY960381
EST:     TCCACGATACGTATGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAA                         ATGGGGATCAACATAGTGGACTCGTCGGTG
genomic: TCCACGATACGTACGGGCAGGCCCTTGCCAACATCCTCGTCTCCCTTCAAgtaagcaaag ... gtctcgtcagATGGGGATCAACATAGTGGACTCGTCGGTG