Sequence
atgc intronic sequence ATGC exonic sequenceACTGCAACAACGGCGACCTGAAGCCGCTGGAGAGGTACCCGGAGATGAGCAGAGCACTGATGAAGGTGGGGCGGCCGATCTACTTCTCGCTCTGCGAATGgtacgtacggtaactaacggaacaggcgtgcgtctctcgatcaccatgacccggtttcgtcatttcgtggcaagcgagctgacttgagtcgatcaccaccatcaccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G095126_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os10g35070.1 (Oryza sativa), 5'ss of exon 8
ACTGCAACAACGGCGACCTGAAGCCGCTGGAGAGGTACCCGGAGATGAGCAGAGCACTGATGAAGGTGGGGCGGCCGATCTACTTCTCGCTCTGCGAATGgtacgt-acggtaactaacggaacaggcgtgcgtct----ctcgatcaccatgacccggtt-----tcgtcatttcgtggcaagcgagctgacttgag--tcgatcaccaccatcaccag-------------------------------------------------------------
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----------------------------------GTACCCGGAGATGAGCAAGGCTCTGATGATGGCCGGCCGGCCGATCTACTTCTCGCTGTGCGAATGgtaggttaggacaactcgatgtgtattagtttctctgaacctctgaatctgtgatcagtttcgtgttcatcattttttttttggcgaacatgcaaaaagattacacatcagtat-attagaaaaatctgtgatcagtttcgtgttcatcattcgagctgtcgtgtttgtcggattgatcag
upper sequence: GRMZM2G095126_T03 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os10g35070.2 (Oryza sativa), 5'ss of exon 6
ACTGCAACAACGGCGACCTGAAGCCGCTGGAGAGG--TACCCGGAG-ATGAGCAGAGCACTGATGAAGG--TGGGGCGGCCGATCTACTTCTCGCTCT-GCGAATGgtacgtacggtaactaacggaacaggcgtgcgtctctcgatcaccatgacccggtttcgtcatttcg-tggcaagcgagctgacttgagtcgatcaccaccatcaccag
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----------------------------GGAGTGGACTACCTCAAGTATGATAACTGCAACAATGGCGACCTGAAGCCACTGGAGAGgtgatcactcttggtgctactacctgtctgaactttctgaa--gccgt-cgatactgaatgtctgaaaaatgactcgtgaatttctctgacaagtagtccaatggtag--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211321684|gb|FL295978.1|FL295978EST: AGAGCACTGATGAAGGTGGGGCGGCCGATCTACTTCTCGCTCTGCGAATG GGGCGACATGCACCCGGCGACGTGGGGCGCGACCTACGGCAACAGCTGGAG
genomic: AGAGCACTGATGAAGGTGGGGCGGCCGATCTACTTCTCGCTCTGCGAATGgtacgtacgg ... ccatcaccagGGGCGACATGCACCCGGCGACGTGGGGCGCGACCTACGGCAACAGCTGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTGCAACAACGGCGACCTGAAGCCGCTGGAGAGGTACCCGGAGATGAGCAGAGCACTGATGAAGGTGGGGCGGCCGATCTACTTCTCGCTCTGCGAATGgtacgtacggtaactaacggaacaggcgtgcgtctctcgatcaccatgacccggtttcgtcatttcgtggcaagcgagctgacttgagtcgatcaccaccatcaccag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA