1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAGCCGTGAATTTCTGTGGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAGgtagaagtacatacctttgcacagttttgatatggttctgttgtcaactactattattgtggtggttttggtgagtccattgcagagtataacacaaact...
species | Zea mays |
transcript | GRMZM2G094123_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAG GTTCTCCAAATATTGGAACTGTACAGAAGGATATAEST: gi|7031274|gb|AW461012.1|AW461012
genomic: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAGgtagaagtac ... atattctcagGTTCTCCAAATATTGGAACTGTACAGAAGGATATA
EST: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAG GTTCTCCAAATATTGGAACTGTACCGAAGGATATACGAAGAATTTTTAGCAEST: gi|60338824|gb|DN205797.1|DN205797
genomic: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAGgtagaagtac ... atattctcagGTTCTCCAAATATTGGAACTGTACAGAAGGATATACGAAGAATTTTTAGCA
EST: GAAGAGGCAGATGAAGAG GTTCTCCAAATATTGGAACTGTACAGAAGGATATACGAAGAATTTTTAGCAEST: gi|67027739|gb|CO456488.1|CO456488
genomic: GAAGAGGCAGATGAAGAGgtagaagtac ... atattctcagGTTCTCCAAATATTGGAACTGTACAGAAGGATATACGAAGAATTTTTAGCA
EST: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAG GGTCTCCAAATATTGGAACTGTNACCGA-GGATATACGAAGAATTTTTAGCEST: gi|31359187|gb|CD443544.1|CD443544
genomic: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAGgtagaagtac ... atattctcagGTTCTCCAAATATTGGAACTGT-ACAGAAGGATATACGAAGAATTTTTAGC
EST: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAG GTTCTCCAAATATGGGAACTGTACCGAAGGATATACGAAGAATTTTTAGCAEST: gi|67020078|gb|CO448827.1|CO448827
genomic: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAGgtagaagtac ... atattctcagGTTCTCCAAATATTGGAACTGTACAGAAGGATATACGAAGAATTTTTAGCA
EST: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAG GTTCTCCAAATATTGGAACTGTACCGAAGGATATACGAAGAATTTTTAGCAEST: gi|67027210|gb|CO455959.1|CO455959
genomic: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAGgtagaagtac ... atattctcagGTTCTCCAAATATTGGAACTGTACAGAAGGATATACGAAGAATTTTTAGCA
EST: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAG GTTCTCCAAATATTGGAACTGTACCGAAGGATATACGAAGAATTTTTAGCAEST: gi|32929788|gb|CF034600.1|CF034600
genomic: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAGgtagaagtac ... atattctcagGTTCTCCAAATATTGGAACTGTACAGAAGGATATACGAAGAATTTTTAGCA
EST: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAG GTTCTCCAAATATTGGAACTGTAEST: gi|51871150|gb|CV126034.1|CV126034
genomic: GGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAGgtagaagtac ... atattctcagGTTCTCCAAATATTGGAACTGTA
EST: ACTAAAGAAGAGGCAGATGAAGAG GTTCTCCAAATATTGGAACTGTACCGAAGGATATACGAAGAATTTTTAGCA
genomic: ACTAAAGAAGAGGCAGATGAAGAGgtagaagtac ... atattctcagGTTCTCCAAATATTGGAACTGTACAGAAGGATATACGAAGAATTTTTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCCGTGAATTTCTGTGGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAGgtagaagtacatacctttgcacagttttgatatggttctgttgtcaactactattattgtggtggttttggtgagtccattgcagagtataacacaaact
- - - - - - - - - GCAAGA
- - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacaaa