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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATAAAGCTGATAGATTTTGGCAGTACCGCCTTTGATAATCGGAACCATAACTCGATTGTTTCTACGAGGCATTATAGGGCACCTGAAATAATATTAGgtaaattggttatttttgaagatttgattcagttttatcttgtttgagatatggactatgataattcagtgtgaagatttatgtgctcttaaatatgctc...

Basic information

species Zea mays
transcript GRMZM2G094039_T01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094039_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 7
GCCATAAAGCTGATAGATTTTGGCAGTACCGCCTTTGATAATCGGAACCATAACTCGATTGTTTCTACGAGGCATTATAGGGCACCTGAAATAATATTAGgtaaattggttatttttgaagatttgattcagttttatcttgtttgagatatggactatgataattcagtgtgaagatttatgtgctcttaaatatgctc-----
||||||||||||||||||||||| ||||||||||||||||||| | | |||| ||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||| ||| ||| |||| ||   |||||||||| ||||| | |||| |||  |  |      ||||| || |||||  ||  | |||||||     
GCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGgtaaattggttatcttttaaggtttgcttttattttatcttgcttgagtt-tggaatatccttgtg----atgaaggttaatgtggcctcgagtatgctccaatg

upper sequence: GRMZM2G094039_T01 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA06G08480.1 (Glycine max), 5'ss of exon 8
GCCATAAAGCTGATAGATTTTGGCAGTACCGCCTTTGATAATCGGAACCATAACTCGATTGTTTCTACGAGGCATTATAGGGCACCTGAAATAATATTAGgtaaattggttatttttgaagatttgattcagttttatcttgtttgagatatggactatgataattcagtgt-gaagatttatgtgctcttaaatatgctc
|| || |||||||| |||||||| ||||| || | |||||||| ||| |||| ||| ||||||||||| |||||||| || || || || || ||  ||||||| |  ||    |||         |    ||||  |  | |||    |      | | |   |  |   | ||| || |||| |  |||    | |   
GCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGgtaactaagtatggttttggctgccaagaatgtttacttgtttttctattgccctgtgtaagtgtgtaacatagaaaatatatg-gtgcttgggaacgaaa