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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctgaattgtactgttatacctgcagccatgttatctattttttgaatgtattctctgtcatcacatgcatttttttgagtaaccgcttattag...

Basic information

species Zea mays
transcript GRMZM2G093050_T01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211125693|gb|FL425311.1|FL425311
EST:     CCTTCCAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGT
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGT
EST: gi|211382701|gb|FL417972.1|FL417972
EST:     CCTTCAAGACCATATCTTCTATCANAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211201856|gb|FL394599.1|FL394599
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211045104|gb|FL385029.1|FL385029
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTA
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCC-TCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTA
EST: gi|30087958|gb|CB886163.1|CB886163
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211273865|gb|FL424030.1|FL424030
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|31361475|gb|CD445832.1|CD445832
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|32934017|gb|CF038829.1|CF038829
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211085801|gb|FL424023.1|FL424023
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211288261|gb|FL396094.1|FL396094
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211065685|gb|FL394006.1|FL394006
EST:     GCCTTCAAGACCATATCTTCTATCANAGTTG                         GCCTCCAAAGGAGTCCTTTCATGNGCTTCCCAAGAAGNGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|101389303|gb|EB816606.1|EB816606
EST:     AGGGAAATGCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: AGGGAAATGCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211411277|gb|FL421620.1|FL421620
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATG
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATG
EST: gi|211376834|gb|FL401929.1|FL401929
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211515632|gb|FL372285.1|FL372285
EST:     CCTTCAAGACCNTATCTTCTATCAGAGTTG                         GGCCTCCAAAGGAG
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagG-CCTCCAAAGGAG
EST: gi|211116333|gb|FL427476.1|FL427476
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211484709|gb|FL383652.1|FL383652
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211076746|gb|FL399059.1|FL399059
EST:     CCTTCAAGACCATATCTTCTATCANAGNTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211527408|gb|FL405478.1|FL405478
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211351487|gb|FL422809.1|FL422809
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211048425|gb|FL057235.1|FL057235
EST:     GCCTTCAAGACCATATCTTCTATCANAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211199329|gb|FL397381.1|FL397381
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211479170|gb|FL394819.1|FL394819
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211381637|gb|FL369263.1|FL369263
EST:     GCCTTCAAGACCNTATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|33096394|gb|CF056388.1|CF056388
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGGGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211413828|gb|FL421637.1|FL421637
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGNGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|67013371|gb|CO442120.1|CO442120
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211376841|gb|FL401936.1|FL401936
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|21987851|gb|BQ779379.1|BQ779379
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|32932539|gb|CF037351.1|CF037351
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGT
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGT
EST: gi|211231554|gb|FL371572.1|FL371572
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211221384|gb|FL382568.1|FL382568
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGNGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211487374|gb|FL376562.1|FL376562
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211008300|gb|FL374933.1|FL374933
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211382707|gb|FL417978.1|FL417978
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211146398|gb|FL424897.1|FL424897
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|211045896|gb|FL416937.1|FL416937
EST:     GCCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: GCCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|101381939|gb|EB813027.1|EB813027
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|87155878|gb|DY400667.1|DY400667
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGTAC
EST: gi|32930116|gb|CF034928.1|CF034928
EST:     CCTTCAAGACCATATCTTCTATCAGAGTTG                         GCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGT
genomic: CCTTCAAGACCATATCTTCTATCAGAGTTGgtatgtgctg ... tggcttgtagGCCTCCAAAGGAGTCCTTTCATGTGCTTCCCAAGAAGTGCGAGATTTGT