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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACCATCAAAGTATGTTAAACACTGGACGGGCATCAAACCAAAAACTGGTGCGAAATACACATGTGACATTGGATACGAGCGGTTCCTGGGGCCTGAGgtatttgattttactaaatgagtgtacgcatatgtagtaacttctatgtcaccgtctgtttcggacttgcagtaattggttgtaggtagaccatgacatg...

Basic information

species Zea mays
transcript GRMZM2G092459_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092459_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os02g38340.1 (Oryza sativa), 5'ss of exon 6
GGAACCATCAAAGTATGTTAAACACTGGACGGGCATCAAACCAAAAACTGGTGCGAAATACACATGTGACATTGGATACGAGCGGTTCCTGGGGCCTGAGgtatttgattttac-taaatgagtgtacgcatatgtagtaacttctatgtc--accgtctgtttcggacttgcagtaattggttgtaggtagaccatgacatg
 || ||    |||||  | || |||||||  ||||||||||||||||||||||| |||||||| || ||||||||||| || || ||||| |||||||||||| |||||||| | | |||| ||  || |||     ||  ||||||      | | | || ||  |  |  ||  | ||   ||     | |   | ||   
AGAGCCCAATAAGTACATAAAGCACTGGAGTGGCATCAAACCAAAAACTGGTGCCAAATACACCTGCGACATTGGATATGAACGCTTCCTAGGGCCTGAGgtaattgattttgcattaatgtgttcac-cattaactgtggcttctacaatgtaacatttgatttaggtt--caaaacttaactgcgatcataatttaactcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78093377|gb|DV521751.1|DV521751
EST:     AATACACATGTGACATTGGATACGAGCGGTTCCTGGGGCCTGAG                         ATCTTCTTCAACCCAGAGATGTATAACAATGACTTCACCACTCCCTTGCAA
genomic: AATACACATGTGACATTGGATACGAGCGGTTCCTGGGGCCTGAGgtatttgatt ... atttgtgcagATCTTCTTCAACCCAGAGATGTATAACAATGACTTCACCACTCCCTTGCAA