1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGGAATTTACCTCTAAATGCCACTGAAACTCAACTGGAGGATGAGTTCAAGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaactttttcacctgtaccagctttgggagattctttttgcgtttacaacttcgaagtttggcattaatgttttcaaatgtaaatgtag
species | Zea mays |
transcript | GRMZM2G091995_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAG ATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTCEST: gi|22490771|gb|BU050694.1|BU050694
genomic: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaacttttt ... gtaaatgtagATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTC
EST: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAG ATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTCEST: gi|19436283|gb|BM952693.1|BM952693
genomic: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaacttttt ... gtaaatgtagATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTC
EST: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAG ATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTCEST: gi|19058851|gb|BM737518.1|BM737518
genomic: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaacttttt ... gtaaatgtagATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTC
EST: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAG ATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTCEST: gi|87153443|gb|DY398232.1|DY398232
genomic: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaacttttt ... gtaaatgtagATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTC
EST: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAG ATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTCEST: gi|19436282|gb|BM952692.1|BM952692
genomic: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaacttttt ... gtaaatgtagATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTC
EST: AGAAGTTNGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAG ATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTCEST: gi|19436716|gb|BM953126.1|BM953126
genomic: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaacttttt ... gtaaatgtagATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTC
EST: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAG ATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTCEST: gi|19058852|gb|BM737519.1|BM737519
genomic: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaacttttt ... gtaaatgtagATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTC
EST: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAG ATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTCEST: gi|19436715|gb|BM953125.1|BM953125
genomic: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaacttttt ... gtaaatgtagATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTC
EST: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAG ATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTCEST: gi|22490983|gb|BU050906.1|BU050906
genomic: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaacttttt ... gtaaatgtagATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTC
EST: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAG ATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTC
genomic: AGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaacttttt ... gtaaatgtagATCCAAGGGTTCTGTTACGGATTTGTTGAGTTTGAGGATTCTACATCTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAATTTACCTCTAAATGCCACTGAAACTCAACTGGAGGATGAGTTCAAGAAGTTTGGTACCATCAAGCAAAATGGCATTCAAGTCAGAAGCAATAAGgtaactttttcacctgtaccagctttgggagattctttttgcgtttacaacttcgaagtttggcattaatgttttcaaatgtaaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA