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TAGTGAAGAAAAAGGTCCCTGTGCTTATATTCTGCAACAAGACAGATAAAGTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacagctctccaagacccaaaatttatcgtacttgcataattagaattagaaatactcaactcagtagtgcatgctgcataaatgctgtggtcat...
species | Zea mays |
transcript | GRMZM2G091503_T05 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|211478433|gb|FL475431.1|FL475431
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|32939995|gb|CF044814.1|CF044814
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|78111931|gb|DV530327.1|DV530327
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|26557561|gb|CA829796.1|CA829796
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCCCTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATTTAGGAACGCCGTATCGTCAGCCGACATTTCTGAEST: gi|78111930|gb|DV530326.1|DV530326
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATTTAGGAACGCCGTATCGTCAGCCGACATTTTTGAEST: gi|193503546|gb|AM937735.1|AM937735
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAA---GCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|113702875|gb|EE680379.1|EE680379
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTTTGAEST: gi|20208508|gb|BQ134597.1|BQ134597
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|78544806|gb|DV622304.1|DV622304
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|60399201|gb|DN232015.1|DN232015
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|33091165|gb|CF051159.1|CF051159
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|21809709|gb|BQ668027.1|BQ668027
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|23357586|gb|BU645235.1|BU645235
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCCCTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|60340296|gb|DN207269.1|DN207269
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|193502482|gb|AM937804.1|AM937804
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT G---AAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGAEST: gi|22520627|gb|BU079438.1|BU079438
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
EST: GTTTCCGCCCCCTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATT GAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
genomic: GTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacag ... catgttgtagGAACAAGCTTAGGGAATCTAGGAACGCCGTATCGTCAGCCGACATCTCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGTGAAGAAAAAGGTCCCTGTGCTTATATTCTGCAACAAGACAGATAAAGTTACCGCCCACTCGAAGGAATTCATCAAGAAGCAGTTGGAGAAAGAATTgtaaggacagctctccaagacccaaaatttatcgtacttgcataattagaattagaaatactcaactcagtagtgcatgctgcataaatgctgtggtcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA