1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCAGAACTCAAAATGCTGAGAAAGAGTTTGAACTTCAAGGCAACACCAATGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagtgattatggctcatgactagctacagtatcttatactttgagtgaactcatgactgatgtcccttatgagcatgtgtggaatgaccactca...
species | Zea mays |
transcript | GRMZM2G090935_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAG ATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAGEST: gi|18174354|gb|BM349742.1|BM349742
genomic: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgcagATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAG
EST: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAG ATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAGEST: gi|78180344|gb|DV550717.1|DV550717
genomic: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgcagATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAG
EST: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAG ATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAGEST: gi|60356905|gb|DN223878.1|DN223878
genomic: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgcagATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAG
EST: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAG ATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAGEST: gi|148966074|gb|EE017013.2|EE017013
genomic: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgcagATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAG
EST: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAG ATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTTTAAAAACAAGEST: gi|60352228|gb|DN219201.1|DN219201
genomic: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgcagATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAG
EST: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAG ATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAGEST: gi|28985678|gb|CB350759.1|CB350759
genomic: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgcagATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAG
EST: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAG ATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAGEST: gi|211235836|gb|FL481622.1|FL481622
genomic: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgcagATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAG
EST: GGAACCAACTCCTGTCAAGGTTGAATTGAAAAAG WTCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAGEST: gi|50333361|gb|CO528487.1|CO528487
genomic: GGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgcagATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAG
EST: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAG ATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAGEST: gi|17929880|gb|BM266840.1|BM266840
genomic: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgcagATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAG
EST: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAANAAG ATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAG
genomic: TGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagt ... tttgttgcagATCCCCCCAACAAGAGCCAAATCGCCAAAGTTTGGTCGTTCTAAAAACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAGAACTCAAAATGCTGAGAAAGAGTTTGAACTTCAAGGCAACACCAATGCCAAGCTTCTATAAGGAACCAACTCCTGTCAAGGTTGAATTGAAAAAGgtaacttagtgattatggctcatgactagctacagtatcttatactttgagtgaactcatgactgatgtcccttatgagcatgtgtggaatgaccactca
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA